The Apostasia genome and the evolution of orchids
文献类型：期刊论文
| 作者 | Zhang, Guo-Qiang; Liu, Ke-Wei; Li, Zhen; Lohaus, Rolf; Hsiao, Yu-Yun; Niu, Shan-Ce; Wang, Jie-Yu; Lin, Yao-Cheng; Xu, Qing; Chen, Li-Jun |
| 刊名 | NATURE
 |
| 出版日期 | 2017 |
| 卷号 | 549期号:7672页码:379+ |
| ISSN号 | 0028-0836 |
| DOI | 10.1016/j.syapm.2016.12.003 |
| 文献子类 | Article |
| 英文摘要 | Constituting approximately 10% of flowering plant species, orchids (Orchidaceae) display unique flower morphologies, possess an extraordinary diversity in lifestyle, and have successfully colonized almost every habitat on Earth(1-3). Here we report the draft genome sequence of Apostasia shenzhenica(4), a representative of one of two genera that form a sister lineage to the rest of the Orchidaceae, providing a reference for inferring the genome content and structure of the most recent common ancestor of all extant orchids and improving our understanding of their origins and evolution. In addition, we present transcriptome data for representatives of Vanilloideae, Cypripedioideae and Orchidoideae, and novel third-generation genome data for two species of Epidendroideae, covering all five orchid subfamilies. A. shenzhenica shows clear evidence of a whole-genome duplication, which is shared by all orchids and occurred shortly before their divergence. Comparisons between A. shenzhenica and other orchids and angiosperms also permitted the reconstruction of an ancestral orchid gene toolkit. We identify new gene families, gene family expansions and contractions, and changes within MADS-box gene classes, which control a diverse suite of developmental processes, during orchid evolution. This study sheds new light on the genetic mechanisms underpinning key orchid innovations, including the development of the labellum and gynostemium, pollinia, and seeds without endosperm, as well as the evolution of epiphytism; reveals relationships between the Orchidaceae subfamilies; and helps clarify the evolutionary history of orchids within the angiosperms. |
| 学科主题 | Biotechnology & Applied Microbiology ; Microbiology |
| 出版地 | BERLIN |
| 电子版国际标准刊号 | 1476-4687 |
| WOS关键词 | MADS-BOX GENES ; MULTIPLE SEQUENCE ALIGNMENT ; PHYLOGENETIC ANALYSIS ; MAXIMUM-LIKELIHOOD ; SUPPLEMENT TREMBL ; NEW-JERSEY ; ARABIDOPSIS ; INFERENCE ; ORIGIN ; SCALE |
| 语种 | 英语 |
| WOS记录号 | WOS:000395610300006 |
| 出版者 | NATURE PORTFOLIO |
| 资助机构 | Funds for Environmental Project of Shenzhen, China [2013-02] ; State Forestry Administration P. R. China [2011-4-53] ; Funds for Forestry Science and Technology Innovation Project of Guangdong, China [2016KJCX025, 2013KJCX014-05] ; Fundamental Research Project of Shenzhen, China [JCYJ20170307170746099, JCYJ20150403150235943] ; Guangdong Natural Science FoundationNational Natural Science Foundation of Guangdong Province [2017A030312004] ; Multidisciplinary Research Partnership 'Bioinformatics: from nucleotides to networks' Project of Ghent University [01MR0310W] ; European Union under European Research Council [322739-DOUBLEUP] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/22143]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.PubBiotech Serv Corp, Wuhan 430070, Hubei, Peoples R China 2.Saitama Univ, Grad Sch Sci & Engn, Sakura Ku, 255 Shimo Okubo, Saitama 3388570, Japan 3.NIFS, 2-1 Fujimoto, Tsukuba, Ibaraki 3058519, Japan 4.Natl Cheng Kung Univ, Inst Trop Plant Sci, Tainan 701, Taiwan 5.Natl Inst Adv Ind Sci & Technol, Bioprod Res Inst, Cent 6,Higashi 1-1-1, Tsukuba, Ibaraki 3058562, Japan 6.Genom Res Inst, Dept Genet, ZA-0028 Pretoria, South Africa 7.Fujian Agr & Forestry Univ, Coll Landscape Architecture, Fuzhou 350002, Fujian, Peoples R China 8.Tsinghua Univ, Grad Sch Shenzhen, Ctr Biotechnol & BioMed, Shenzhen 518055, Peoples R China 9.Acad Sinica, Biotechnol Ctr Southern Taiwan, Agr Biotechnol Res Ctr, Tainan 741, Taiwan 10.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhang, Guo-Qiang,Liu, Ke-Wei,Li, Zhen,et al. The Apostasia genome and the evolution of orchids[J]. NATURE,2017,549(7672):379+. |
| APA | Zhang, Guo-Qiang.,Liu, Ke-Wei.,Li, Zhen.,Lohaus, Rolf.,Hsiao, Yu-Yun.,...&Liu, Zhong-Jian.(2017).The Apostasia genome and the evolution of orchids.NATURE,549(7672),379+. |
| MLA | Zhang, Guo-Qiang,et al."The Apostasia genome and the evolution of orchids".NATURE 549.7672(2017):379+. |
入库方式： OAI收割
来源：植物研究所
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