Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids
文献类型：期刊论文
| 作者 | Lin, Choun-Sea; Chen, Jeremy J. W.; Chiu, Chi-Chou; Hsiao, Han C. W.; Yang, Chen-Jui; Jin, Xiao-Hua ; Leebens-Mack, James; de Pamphilis, Claude W.; Huang, Yao-Ting; Yang, Ling-Hung
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| 刊名 | PLANT JOURNAL
 |
| 出版日期 | 2017 |
| 卷号 | 90期号:5页码:994-1006 |
| 关键词 | NDH complex orchid Apostasia odorata gene loss photoautotrophic plant |
| ISSN号 | 0960-7412 |
| DOI | 10.1109/JSTARS.2017.2711482 |
| 文献子类 | Article |
| 英文摘要 | The chloroplast NAD(P)H dehydrogenase-like (NDH) complex consists of about 30 subunits from both the nuclear and chloroplast genomes and is ubiquitous across most land plants. In some orchids, such as Phalaenopsis equestris, Dendrobium officinale and Dendrobium catenatum, most of the 11 chloroplast genomeencoded ndh genes (cp-ndh) have been lost. Here we investigated whether functional cp-ndh genes have been completely lost in these orchids or whether they have been transferred and retained in the nuclear genome. Further, we assessed whether both cp-ndh genes and nucleus-encoded NDH-related genes can be lost, resulting in the absence of the NDH complex. Comparative analyses of the genome of Apostasia odor-ata, an orchid species with a complete complement of cp-ndh genes which represents the sister lineage to all other orchids, and three published orchid genome sequences for P. equestris, D. officinale and D. catenatum, which are all missing cp-ndh genes, indicated that copies of cp-ndh genes are not present in any of these four nuclear genomes. This observation suggests that the NDH complex is not necessary for some plants. Comparative genomic/transcriptomic analyses of currently available plastid genome sequences and nuclear transcriptome data showed that 47 out of 660 photoautotrophic plants and all the heterotrophic plants are missing plastid-encoded cp-ndh genes and exhibit no evidence for maintenance of a functional NDH complex. Our data indicate that the NDH complex can be lost in photoautotrophic plant species. Further, the loss of the NDH complex may increase the probability of transition from a photoautotrophic to a heterotrophic life history. |
| 学科主题 | Engineering ; Physical Geography ; Remote Sensing ; Imaging Science & Photographic Technology |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1365-313X |
| WOS关键词 | CYCLIC ELECTRON FLOW ; PHOTOSYSTEM-I ; NAD(P)H DEHYDROGENASE ; PLASTID GENOMES ; SUPERCOMPLEX FORMATION ; DENDROBIUM-OFFICINALE ; PROVIDES INSIGHTS ; EVOLUTIONARY RATE ; PHOTOSYNTHESIS ; SEQUENCE |
| 语种 | 英语 |
| WOS记录号 | WOS:000412626400034 |
| 出版者 | WILEY |
| 资助机构 | Agricultural Biotechnology Research Center, Academia Sinica of Taiwan ; Ministry of Science and Technology, TaiwanMinistry of Science and Technology, Taiwan [MOST 104-2311-B-006-001] ; Direct For Biological SciencesNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [0922742, 1442199] Funding Source: National Science Foundation |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/22267]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Acad Sinica, Agr Biotechnol Res Ctr, Taipei, Taiwan 2.Univ Alberta, Dept Biol Sci, Edmonton, AB, Canada 3.Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming, Peoples R China 4.Natl Chung Cheng Univ, Dept Comp Sci & Informat Engn, Chiayi, Taiwan 5.de Pamphilis, Claude W.] Penn State Univ, Dept Biol, State Coll, PA USA 6.Univ Georgia, Dept Plant Biol, Athens, GA 30602 USA 7.Chinese Acad Sci, Inst Bot, Beijing, Peoples R China 8.Natl Taiwan Univ, Inst Ecol & Evolutionary Biol, Taipei, Taiwan 9.Hsiao, Han C. W.] Asia Univ, Dept Bioinformat & Med Engn, Taichung, Taiwan 10.Natl Cheng Kung Univ, Inst Trop Plant Sci, Tainan, Taiwan |
| 推荐引用方式 GB/T 7714 | Lin, Choun-Sea,Chen, Jeremy J. W.,Chiu, Chi-Chou,et al. Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids[J]. PLANT JOURNAL,2017,90(5):994-1006. |
| APA | Lin, Choun-Sea.,Chen, Jeremy J. W..,Chiu, Chi-Chou.,Hsiao, Han C. W..,Yang, Chen-Jui.,...&Shih, Ming-Che.(2017).Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids.PLANT JOURNAL,90(5),994-1006. |
| MLA | Lin, Choun-Sea,et al."Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids".PLANT JOURNAL 90.5(2017):994-1006. |
入库方式： OAI收割
来源：植物研究所
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