Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species
文献类型：期刊论文
| 作者 | Wu, Zhiqiang; Gu, Cuihua2; Tembrock, Luke R.; Zhang, Dong1; Ge, Song
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| 刊名 | PLOS ONE
 |
| 出版日期 | 2017 |
| 卷号 | 12期号:5 |
| ISSN号 | 1932-6203 |
| DOI | 10.1111/tpj.13525 |
| 文献子类 | Article |
| 英文摘要 | Chloroplast genomes are a significant genomic resource in plant species and have been used in many research areas. The complete genomic information from wild crop species could supply a valuable genetic reservoir for breeding. Chikusichloa mutica is one of the most important wild distant relatives of cultivated rice. In this study, we sequenced and characterized its complete chloroplast (cp) genome and compared it with other species in the same tribe. The whole cp genome sequence is 136,603 bp in size and exhibits a typical quadripartite structure with large and small single-copy regions (LSC, 82,327 bp; SSC, 12,598 bp) separated by a pair of 20,839-bp inverted repeats (IRA, B). A total of 110 unique genes are annotated, including 76 protein-coding genes, 4 ribosomal RNA genes and 30 tRNA genes. The genome structure, gene order, GC content, and other features are similar to those of other angiosperm cp genomes. When comparing the cp genomes between Oryzinae and Zizaniinae subtribes, the main differences were found between the junction regions and distribution of simple sequence repeats (SSRs). In comparing the two Chikusichloa species, the genomes were only 40 bp different in length and 108 polymorphic sites, including 83 single nucleotide substitutions (SNPs) and 25 insertion-deletions (Indels), were found between the whole cp genomes. The complete cp genome of C. mutica will be an important genetic tool for future breeding programs and understanding the evolution of wild rice relatives. |
| 学科主题 | Plant Sciences |
| 出版地 | SAN FRANCISCO |
| WOS关键词 | COMPLETE NUCLEOTIDE-SEQUENCE ; GENE ORGANIZATION ; PLASTID GENOMES ; DNA-SEQUENCES ; POACEAE ; EVOLUTION ; PATTERNS ; MITOCHONDRIAL ; ANGIOSPERMS ; EXPRESSION |
| 语种 | 英语 |
| WOS记录号 | WOS:000403346500013 |
| 出版者 | PUBLIC LIBRARY SCIENCE |
| 资助机构 | Zhejiang Provincial Natural Science Foundation of ChinaNatural Science Foundation of Zhejiang Province [LY17C160003] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [30990240, 31300581] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/22295]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Tembrock, Luke R.] Colorado State Univ, Dept Biol, Ft Collins, CO 80523 USA 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 3.Zhejiang Agr & Forestry Univ, Sch Landscape & Architecture, Hangzhou, Zhejiang, Peoples R China 4.Iowa State Univ, Dept Stat, Ames, IA USA |
| 推荐引用方式 GB/T 7714 | Wu, Zhiqiang,Gu, Cuihua,Tembrock, Luke R.,et al. Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species[J]. PLOS ONE,2017,12(5). |
| APA | Wu, Zhiqiang,Gu, Cuihua,Tembrock, Luke R.,Zhang, Dong,&Ge, Song.(2017).Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species.PLOS ONE,12(5). |
| MLA | Wu, Zhiqiang,et al."Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species".PLOS ONE 12.5(2017). |
入库方式： OAI收割
来源：植物研究所
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