The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes
文献类型：期刊论文
| 作者 | Kang, Jong-Soo; Lee, Byoung Yoon; Kwak, Myounghai5 |
| 刊名 | PLOS ONE
 |
| 出版日期 | 2017 |
| 卷号 | 12期号:2 |
| ISSN号 | 1932-6203 |
| DOI | 10.1016/j.biocon.2016.04.022 |
| 文献子类 | Article |
| 英文摘要 | The complete chloroplast genomes of Lychnis wilfordii and Silene capitata were determined and compared with ten previously reported Caryophyllaceae chloroplast genomes. The chloroplast genome sequences of L. wilfordii and S. capitata contain 152,320 bp and 150,224 bp, respectively. The gene contents and orders among 12 Caryophyllaceae species are consistent, but several microstructural changes have occurred. Expansion of the inverted repeat (IR) regions at the large single copy (LSC)/IRb and small single copy (SSC)/IR boundaries led to partial or entire gene duplications. Additionally, rearrangements of the LSC region were caused by gene inversions and/or transpositions. The 18 kb inversions, which occurred three times in different lineages of tribe Sileneae, were thought to be facilitated by the intermolecular duplicated sequences. Sequence analyses of the L. wilfordii and S. capitata genomes revealed 39 and 43 repeats, respectively, including forward, palindromic, and reverse repeats. In addition, a total of 67 and 56 simple sequence repeats were discovered in the L. wilfordii and S. capitata chloroplast genomes, respectively. Finally, we constructed phylogenetic trees of the 12 Caryophyllaceae species and two Amaranthaceae species based on 73 protein-coding genes using both maximum parsimony and likelihood methods. |
| 学科主题 | Biodiversity & Conservation ; Environmental Sciences & Ecology |
| 出版地 | SAN FRANCISCO |
| WOS关键词 | COMPLETE NUCLEOTIDE-SEQUENCE ; PLASTID GENOMES ; EVOLUTION ; MITOCHONDRIAL ; ANGIOSPERMS ; PLANTS ; REPEAT ; FAMILY ; CLASSIFICATION ; REARRANGEMENTS |
| 语种 | 英语 |
| WOS记录号 | WOS:000404709100009 |
| 出版者 | PUBLIC LIBRARY SCIENCE |
| 资助机构 | National Institute of Biological Resources (NIBR) - Ministry of Environment of the Republic of Korea [NIBR201503102] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/22300]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.[Kang, Jong-Soo 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 4.Natl Inst Biol Resources, Plant Resources Div, Incheon, South Korea 5.Lee, Byoung Yoon |
| 推荐引用方式 GB/T 7714 | Kang, Jong-Soo,Lee, Byoung Yoon,Kwak, Myounghai. The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes[J]. PLOS ONE,2017,12(2). |
| APA | Kang, Jong-Soo,Lee, Byoung Yoon,&Kwak, Myounghai.(2017).The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes.PLOS ONE,12(2). |
| MLA | Kang, Jong-Soo,et al."The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes".PLOS ONE 12.2(2017). |
入库方式： OAI收割
来源：植物研究所
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