中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
首页 机构 成果 学者
  
  1. CAS IR Grid
  2. 植物研究所
  3. 中国科学院植物研究所
  4. 系统与进化植物学国家重点实验室
The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes

文献类型：期刊论文

作者Kang, Jong-Soo; Lee, Byoung Yoon; Kwak, Myounghai5
刊名PLOS ONE
出版日期2017
卷号12期号:2
ISSN号1932-6203
DOI10.1016/j.biocon.2016.04.022
文献子类Article
英文摘要The complete chloroplast genomes of Lychnis wilfordii and Silene capitata were determined and compared with ten previously reported Caryophyllaceae chloroplast genomes. The chloroplast genome sequences of L. wilfordii and S. capitata contain 152,320 bp and 150,224 bp, respectively. The gene contents and orders among 12 Caryophyllaceae species are consistent, but several microstructural changes have occurred. Expansion of the inverted repeat (IR) regions at the large single copy (LSC)/IRb and small single copy (SSC)/IR boundaries led to partial or entire gene duplications. Additionally, rearrangements of the LSC region were caused by gene inversions and/or transpositions. The 18 kb inversions, which occurred three times in different lineages of tribe Sileneae, were thought to be facilitated by the intermolecular duplicated sequences. Sequence analyses of the L. wilfordii and S. capitata genomes revealed 39 and 43 repeats, respectively, including forward, palindromic, and reverse repeats. In addition, a total of 67 and 56 simple sequence repeats were discovered in the L. wilfordii and S. capitata chloroplast genomes, respectively. Finally, we constructed phylogenetic trees of the 12 Caryophyllaceae species and two Amaranthaceae species based on 73 protein-coding genes using both maximum parsimony and likelihood methods.
学科主题Biodiversity & Conservation ; Environmental Sciences & Ecology
出版地SAN FRANCISCO
WOS关键词COMPLETE NUCLEOTIDE-SEQUENCE ; PLASTID GENOMES ; EVOLUTION ; MITOCHONDRIAL ; ANGIOSPERMS ; PLANTS ; REPEAT ; FAMILY ; CLASSIFICATION ; REARRANGEMENTS
语种英语
出版者PUBLIC LIBRARY SCIENCE
WOS记录号WOS:000404709100009
资助机构National Institute of Biological Resources (NIBR) - Ministry of Environment of the Republic of Korea [NIBR201503102]
源URL[http://ir.ibcas.ac.cn/handle/2S10CLM1/22300]  
专题系统与进化植物学国家重点实验室
作者单位1.[Kang, Jong-Soo
2.Univ Chinese Acad Sci, Beijing, Peoples R China
3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China
4.Natl Inst Biol Resources, Plant Resources Div, Incheon, South Korea
5.Lee, Byoung Yoon
推荐引用方式
GB/T 7714		 Kang, Jong-Soo,Lee, Byoung Yoon,Kwak, Myounghai. The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes[J]. PLOS ONE,2017,12(2).
APA Kang, Jong-Soo,Lee, Byoung Yoon,&Kwak, Myounghai.(2017).The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes.PLOS ONE,12(2).
MLA Kang, Jong-Soo,et al."The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes".PLOS ONE 12.2(2017).

入库方式： OAI收割

来源：植物研究所

浏览0
下载0
收藏0
其他版本

除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。