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Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response

文献类型：期刊论文

作者Zhang, Zhan2,3; Ren, Chong2,3; Zou, Luming2,3; Wang, Yi2,3; Li, Shaohua2; Liang, Zhenchang2,4
刊名GENOME
出版日期2018
卷号61期号:10页码:713-723
关键词grape (Vitis vinifera L.) GATA transcription factor evolution expression analysis
ISSN号0831-2796
DOI10.1139/gen-2018-0042
文献子类Article
英文摘要The plant GATA family is one of the most important transcription factors involved in light-responsive development, nitrogen metabolism, phytohormone signaling, and source/sink balance. However, the function of the GATA gene is less known in grape (Vitis vinifera L.). In this study, we comprehensively analyzed the GATA family in grape, particularly the phylogenetic evolution, duplication patterns, conserved motifs, gene structures, cis-elements, tissue expression patterns, and predicted function of VvGATA genes in response to abiotic stress. The potential roles of VvGATA genes in berry development were also investigated. The GATA transcription factors displayed expression diversity among different grape organs and tissues, and some of them showed preferential expression in a specific tissue. Heterotrophic cultured cells were used as model systems for the functional characterization of the VvGATA gene and study of its response to light and phytohormone. Results indicated that some VvGATA genes displayed differential responses to light and phytohormones, suggesting their role in light and hormone signaling pathways. A thorough analysis of GATA transcription factors in grape (V. vinifera L) presented the characterization and functional prediction of VvGATA genes. The data presented here lay the foundation for further functional studies of grape GATA transcription factors.
学科主题Biotechnology & Applied Microbiology ; Genetics & Heredity
出版地OTTAWA
电子版国际标准刊号1480-3321
WOS关键词TRANSCRIPTION FACTORS GNC ; ZINC-FINGER PROTEIN ; HANABA-TARANU ; SIGNALING PATHWAYS ; FLOWER DEVELOPMENT ; LLM-DOMAIN ; ARABIDOPSIS ; DNA ; METABOLISM ; EVOLUTION
语种英语
WOS记录号WOS:000446892400002
出版者CANADIAN SCIENCE PUBLISHING
资助机构National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31772266, 31572090] ; Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203] ; Hundred Talents of Chinese Academy of Sciences
源URL[http://ir.ibcas.ac.cn/handle/2S10CLM1/20463]  
专题中科院北方资源植物重点实验室
作者单位1.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China
2.Chinese Acad Sci, Beijing Key Lab Grape Sci & Enol, Beijing 100093, Peoples R China
3.Chinese Acad Sci, Inst Bot, CAS Key Lab Plant Resources, Beijing 100093, Peoples R China
4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式
GB/T 7714		 Zhang, Zhan,Ren, Chong,Zou, Luming,et al. Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response[J]. GENOME,2018,61(10):713-723.
APA Zhang, Zhan,Ren, Chong,Zou, Luming,Wang, Yi,Li, Shaohua,&Liang, Zhenchang.(2018).Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response.GENOME,61(10),713-723.
MLA Zhang, Zhan,et al."Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response".GENOME 61.10(2018):713-723.

入库方式： OAI收割

来源：植物研究所

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