热门
FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
文献类型：期刊论文
| 作者 | Polme,Sergei; Abarenkov,Kessy; Henrik Nilsson,R.; Lindahl,Bjorn D.; Clemmensen,Karina Engelbrecht; Kauserud,Havard; Nguyen,Nhu; Kjoller,Rasmus; Bates,Scott T.; Baldrian,Petr |
| 刊名 | FUNGAL DIVERSITY
 |
| 出版日期 | 2020 |
| 卷号 | 105期号:1页码:1-16 |
| ISSN号 | 1560-2745 |
| 关键词 | Fungal traits Trophic modes Function Guild Bioinformatics High-throughput sequencing Community ecology PLANT IDENTIFICATION ENDOPHYTES ECOLOGY BIODIVERSITY RECOGNITION EVOLUTION LINEAGES PARADIGM DECAY |
| DOI | 10.1007/s13225-020-00466-2 |
| 英文摘要 | The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and Fun(Fun) together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold. |
| WOS记录号 | WOS:000608948200001 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/73373]  |
| 专题 | 中国科学院昆明植物研究所 |
| 作者单位 | 1.Pontificia Univ Catolica Chile, Dept Ecol, Alameda 340, CA, Chile 2.Univ Sydney, Westmead Clin Sch, Sydney, NSW, Australia 3.Univ Sydney, Westmead Inst Med Res, Sydney, NSW, Australia 4.Westmead Hosp, Sydney, NSW, Australia 5.Biol Res Ctr Szeged, H-6726 Szeged, Hungary 6.Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing 100101, Peoples R China 7.Hans Knoll Inst HKI, Leibniz Inst Nat Prod Res & Infect Biol, Natl Reference Ctr Invas Fungal Infect NRZMyk, Jena, Germany 8.Purdue Univ, Dept Bot & Plant Pathol, W Lafayette, IN 47907 USA 9.Uppsala Univ, Dept Organismal Biol, Uppsala, Sweden 10.Swedish Univ Agr Sci SLU, Southern Swedish Forest Res Ctr, Alnarp, Sweden |
| 推荐引用方式 GB/T 7714 | Polme,Sergei,Abarenkov,Kessy,Henrik Nilsson,R.,et al. FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles[J]. FUNGAL DIVERSITY,2020,105(1):1-16. |
| APA | Polme,Sergei.,Abarenkov,Kessy.,Henrik Nilsson,R..,Lindahl,Bjorn D..,Clemmensen,Karina Engelbrecht.,...&Tedersoo,Leho.(2020).FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles.FUNGAL DIVERSITY,105(1),1-16. |
| MLA | Polme,Sergei,et al."FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles".FUNGAL DIVERSITY 105.1(2020):1-16. |
入库方式： OAI收割
来源：昆明植物研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。