Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution
文献类型：期刊论文
| 作者 | Ye,Xia-Ying; Ma,Peng-Fei; Guo,Cen; Li,De-Zhu
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| 刊名 | JOURNAL OF SYSTEMATICS AND EVOLUTION
 |
| 出版日期 | 2021 |
| 卷号 | 59期号:6页码:1183-1197 |
| 关键词 | plastome ddRAD Fargesia phylogenetic incongruence reticulate evolution Yushania CONFLICTING GENE TREES BAMBOOS POACEAE ARUNDINARIEAE POACEAE PHYLOGENETIC-RELATIONSHIPS MORPHOLOGICAL EVOLUTION BALANCING SELECTION THAMNOCALAMUS GROUP ALLIES GRAMINEAE RADSEQ DATA GBSSI GENE |
| ISSN号 | 1674-4918 |
| DOI | 10.1111/jse.12719 |
| 英文摘要 | Reticulate evolution is a common and important driving force in angiosperm evolution. In this study, we analyzed the phylogenetic signals of genomic regions with different inheritance patterns to understand the evolutionary process of organisms using species-rich Himalaya-Hengduan taxa of bamboos (Fargesia Franchet and Yushania Keng). We constructed phylogenetic trees using different sampling strategies and reconstruction methods based on genome skimming and double digest restriction-site-associated DNA sequencing data. We assessed the congruence of topologies generated from different datasets and employed several approaches to reveal the causes of phylogenetic incongruence, including the detection of hybridization and introgression using PhyloNetworks and the D-statistic test (ABBA-BABA test). We found that, in the plastome-based phylogeny, Fargesia bamboos can be clustered into three groups and Yushania was nested within one of them, which contradicts the nuclear-double digest restriction-site-associated DNA sequencing-based phylogeny. Moreover, the genetic variation of chloroplast DNA is significantly correlated with geographical distribution. The strong signal of incomplete lineage sorting, hybridization, introgression, and cytoplasmic gene flow found among genera and species suggests that reticulate evolution is the main cause for the phylogenetic incongruence between nuclear and chloroplast datasets. Our results add evidence that genomes with different inheritance patterns can reveal distinct evolutionary histories of species and suggest that reticulate evolution is prevalent in rapidly diversifying groups. |
| WOS记录号 | WOS:000637830100001 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/73542]  |
| 专题 | 中国科学院昆明植物研究所 |
| 作者单位 | 1.Guo, Cen 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China 3.Zhaotong Univ, Agron & Life Sci Dept, Zhaotong 657000, Yunnan, Peoples R China 4.[Ye, Xia-Ying 5.Ma, Peng-Fei |
| 推荐引用方式 GB/T 7714 | Ye,Xia-Ying,Ma,Peng-Fei,Guo,Cen,et al. Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2021,59(6):1183-1197. |
| APA | Ye,Xia-Ying,Ma,Peng-Fei,Guo,Cen,&Li,De-Zhu.(2021).Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution.JOURNAL OF SYSTEMATICS AND EVOLUTION,59(6),1183-1197. |
| MLA | Ye,Xia-Ying,et al."Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution".JOURNAL OF SYSTEMATICS AND EVOLUTION 59.6(2021):1183-1197. |
入库方式： OAI收割
来源：昆明植物研究所
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