High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L.
文献类型：期刊论文
| 作者 | Wang,Mingcheng; Gu,Zhijia; Fu,Zhixi; Jiang,Dechun |
| 刊名 | DNA RESEARCH
 |
| 出版日期 | 2021 |
| 卷号 | 28期号:6页码:dsab022 |
| 关键词 | caper spurge biodiesel plant genome assembly nanopore sequencing oil metabolism PHYLOGENETIC ANALYSIS FOSSIL-FUELS ANNOTATION TOOL IDENTIFICATION PREDICTION DATABASE SEEDS GENE |
| ISSN号 | 1340-2838 |
| DOI | 10.1093/dnares/dsab022 |
| 英文摘要 | Caper spurge, Euphorbia lathyris L., is an important energy crop and medicinal crop. Here, we generated a high-quality, chromosome-level genome assembly of caper spurge using Oxford Nanopore sequencing, Illumina sequencing, and Hi-C technology. The final genome assembly was similar to 988.9 Mb in size, 99.8% of which could be grouped into 10 pseudochromosomes, with contig and scaffold N50 values of 32.6 and 95.7 Mb, respectively. A total of 651.4 Mb repetitive sequences and 36,342 protein-coding genes were predicted in the genome assembly. Comparative genomic analysis showed that caper spurge and castor bean clustered together. We found that no independent whole-genome duplication event had occurred in caper spurge after its split from the castor bean, and recent substantial amplification of long terminal repeat retrotransposons has contributed significantly to its genome expansion. Furthermore, based on gene homology searching, we identified a number of candidate genes involved in the biosynthesis of fatty acids and triacylglycerols. The reference genome presented here will be highly useful for the further study of the genetics, genomics, and breeding of this high-value crop, as well as for evolutionary studies of spurge family and angiosperms. |
| WOS记录号 | WOS:000743571600005 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/73581]  |
| 专题 | 中国科学院昆明植物研究所 |
| 作者单位 | 1.Chengdu Univ, Inst Adv Study, Chengdu 610106, Peoples R China 2.Sichuan Normal Univ, Coll Life Sci, Chengdu 610101, Peoples R China 3.Chinese Acad Sci, CAS Key Lab Mt Ecol Restorat & Bioresource Utiliz, Chengdu Inst Biol, Chengdu 610041, Peoples R China 4.Chinese Acad Sci, Biodivers Conservat Key Lab Sichuan Prov, Chengdu Inst Biol, Chengdu 610041, Peoples R China 5.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang,Mingcheng,Gu,Zhijia,Fu,Zhixi,et al. High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L.[J]. DNA RESEARCH,2021,28(6):dsab022. |
| APA | Wang,Mingcheng,Gu,Zhijia,Fu,Zhixi,&Jiang,Dechun.(2021).High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L..DNA RESEARCH,28(6),dsab022. |
| MLA | Wang,Mingcheng,et al."High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L.".DNA RESEARCH 28.6(2021):dsab022. |
入库方式： OAI收割
来源：昆明植物研究所
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