Comprehensive genomic analysis and expression profiling of cysteine-rich polycomb-like transcription factor gene family in tea tree
文献类型：期刊论文
| 作者 | Nan,Hong; Lin,Yanglei; Wang,Xinghua; Gao,Lizhi
|
| 刊名 | HORTICULTURAL PLANT JOURNAL
 |
| 出版日期 | 2021 |
| 卷号 | 7期号:5页码:469-478 |
| 关键词 | Camellia sinensis CPP transcription factor Genome-wide analysis Gene expression profiling WIDE IDENTIFICATION CUCUMIS-SATIVUS PROTEIN EVOLUTION SEQUENCE ARABIDOPSIS INSIGHTS TSO1 EXPANSION DOMAIN |
| ISSN号 | 2095-9885 |
| DOI | 10.1016/j.hpj.2021.03.001 |
| 英文摘要 | Cysteine-rich polycomb-like (CPP) is a small gene family in plants, which plays key role in plant development and stress response. Although CPP transcription factors have been characterized in several other plant species, a genome-wide characterization of the CPP gene family has been absent in Camellia sinensis. In this study, we totally identified 7, 8, and 8 non-redundant CsCPP genes in three published genomes, including Camellia sinensis var. assamica cv. Yunkang-10 (CSA-YK10), Camellia sinensis var. sinensis cv. Biyun (CSS-BY) and Camellia sinensis var. sinensis cv. Shuchazao (CSS-SCZ). CPP proteins from tea tree and other plant species were classified into three groups, which were further divided into four subgroups based on phylogenetic relationships. Most CPP genes in the same subgroup had similar gene structures and conserved motifs. The cis-acting elements analysis indicated that CPP genes might be involved in plant growth, development and stress responses. Analysis of gene expression using qRT-PCR experiments validated that CPP genes exhibited different expression patterns across the examined tissues. All the genes were expressed differentially in a range of tissues, indicating that CPPs were involved in a range of developmental and physiological processes. This study has obtained new insights into the evolution and function of the CPP gene family in the growth and development of tea plants, and also provide candidate genes for further functional characterization in tea tree. |
| WOS记录号 | WOS:000690463400010 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/73689]  |
| 专题 | 中国科学院昆明植物研究所 |
| 作者单位 | 1.Univ Chinese Acad Sci, Beijing 100039, Peoples R China 2.Chinese Acad Sci, Plant Germplasm & Genom Ctr, Kunming Inst Bot, Germplasm Bank Wild Species Southwest China, Kunming 650201, Yunnan, Peoples R China 3.South China Agr Univ, Inst Genom & Bioinformat, Guangzhou 510642, Peoples R China 4.Yunnan Puer Tea Tree Breeding Stn, Pu Er 665099, Peoples R China |
| 推荐引用方式 GB/T 7714 | Nan,Hong,Lin,Yanglei,Wang,Xinghua,et al. Comprehensive genomic analysis and expression profiling of cysteine-rich polycomb-like transcription factor gene family in tea tree[J]. HORTICULTURAL PLANT JOURNAL,2021,7(5):469-478. |
| APA | Nan,Hong,Lin,Yanglei,Wang,Xinghua,&Gao,Lizhi.(2021).Comprehensive genomic analysis and expression profiling of cysteine-rich polycomb-like transcription factor gene family in tea tree.HORTICULTURAL PLANT JOURNAL,7(5),469-478. |
| MLA | Nan,Hong,et al."Comprehensive genomic analysis and expression profiling of cysteine-rich polycomb-like transcription factor gene family in tea tree".HORTICULTURAL PLANT JOURNAL 7.5(2021):469-478. |
入库方式： OAI收割
来源：昆明植物研究所
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