A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales
文献类型：期刊论文
| 作者 | Yang, Lei-Lei; Li, Hong-Lei; Wei, Lei4; Yang, Tuo; Kuang, Dai-Yong; Li, Ming-Hong; Liao, Yi-Ying; Chen, Zhi-Duan ; Wu, Hong; Zhang, Shou-Zhou
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| 刊名 | JOURNAL OF SYSTEMATICS AND EVOLUTION
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| 出版日期 | 2016 |
| 卷号 | 54期号:4页码:400-415 |
| 关键词 | Gentianales maximum likelihood phylogeny supermatrix approach |
| ISSN号 | 1674-4918 |
| DOI | 10.1111/jse.12192 |
| 文献子类 | Article |
| 英文摘要 | Gentianales consist of Apocynaceae, Gelsemiaceae, Gentianaceae, Loganiaceae, and Rubiaceae, of which the majority are woody plants in tropical and subtropical areas. Despite extensive efforts in reconstructing the phylogeny of Gentianales based on molecular data, some interfamily and intrafamily relationships remain uncertain. We reconstructed the genus-level phylogeny of Gentianales based on the supermatrix of eight plastid markers (rbcL, matK, atpB, ndhF, rpl16, rps16, the trnL-trnF region, and atpB-rbcL spacer) and one mitochondrial gene (matR) using maximum likelihood. The major clades and their relationships retrieved in the present study concur with those of previous studies. All of the five families of Gentianales are monophyletic with strong support. We resolved Rubiaceae as sister to the remaining families in Gentianales and showed support for the sister relationship between Loganiaceae and Apocynaceae. Our results provide new insights into relationships among intrafamilial clades. For example, within Rubiaceae we found that Craterispermeae were sister to Morindeae + (Palicoureeae + Psychotrieae) and that Theligoneae were sister to Putorieae. Within Gentianaceae, our phylogeny revealed that Gentianeae were sister to Helieae and Potalieae, and subtribe Lisianthiinae were sister to Potaliinae and Faroinae. Within Loganiaceae, we found Neuburgia as sister to Spigelieae. Within Apocynaceae, our results supported Amsonieae as sister to Melodineae, and Hunterieae as sister to a clade comprising Plumerieae + (Carisseae + APSA). We also confirmed the monophyly of Perplocoideae and the relationships among Baisseeae + (Secamonoideae + Asclepiadoideae). |
| 学科主题 | Plant Sciences |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1759-6831 |
| WOS关键词 | COFFEE FAMILY ; RAUVOLFIOIDEAE APOCYNACEAE ; MAXIMUM-LIKELIHOOD ; RBCL SEQUENCES ; MOLECULAR-DATA ; DNA MARKERS ; CLASSIFICATION ; RUBIACEAE ; CHLOROPLAST ; POSITION |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000383771900009 |
| 出版者 | WILEY |
| 资助机构 | Scientific Research Fund of Fairylake Botanical Garden ; Shenzhen Key Laboratory of Southern Subtropical Plant Diversity [SSTLAB-2014-04] ; National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100] ; Chinese Academy of Sciences International Institution Development Program [SAJC201315] ; Shenzhen Science and Technology Innovation Council Fund [KQC 201105310009A] ; Chinese Academy of Sciences External Cooperation Program of BIC [GJHZ201321] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31500175] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25010]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Fairylake Bot Garden, Shenzhen Key Lab Southern Subtrop Plant Divers, Shenzhen, Peoples R China 2.Hengshan Natl Nat Reserve Adm, Hengshan 421900, Hunan, Peoples R China 3.State Ocean Adm, Marine Environm Monitor Ctr Shanwei, Shanwei 516600, Guangdong, Peoples R China 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 5.Chinese Acad Sci, Shenzhen 518004, Guangdong, Peoples R China 6.South China Agr Univ, Coll Life Sci, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangzhou 510642, Guangdong, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yang, Lei-Lei,Li, Hong-Lei,Wei, Lei,et al. A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4):400-415. |
| APA | Yang, Lei-Lei.,Li, Hong-Lei.,Wei, Lei.,Yang, Tuo.,Kuang, Dai-Yong.,...&Zhang, Shou-Zhou.(2016).A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4),400-415. |
| MLA | Yang, Lei-Lei,et al."A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016):400-415. |
入库方式： OAI收割
来源：植物研究所
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