Genome-Wide Analysis Indicates Lineage-Specific Gene Loss during Papilionoideae Evolution
文献类型：期刊论文
| 作者 | Gu, Yongzhe2; Xing, Shilai2; He, Chaoying
|
| 刊名 | GENOME BIOLOGY AND EVOLUTION
 |
| 出版日期 | 2016 |
| 卷号 | 8期号:3页码:635-648 |
| 关键词 | defense response gene loss genome evolution legume nitrogen fixation |
| ISSN号 | 1759-6653 |
| DOI | 10.1093/gbe/evw021 |
| 文献子类 | Article |
| 英文摘要 | Gene loss is the driving force for changes in genome and morphology; however, this particular evolutionary event has been poorly investigated in leguminous plants. Legumes (Fabaceae) have some lineage-specific and diagnostic characteristics that are distinct from other angiosperms. To understand the potential role of gene loss in the evolution of legumes, we compared six genome-sequenced legume species of Papilionoideae, the largest representative clade of Fabaceae, such as Glycine max, with 34 nonlegume plant species, such as Arabidopsis thaliana. The results showed that the putative orthologs of the 34 Arabidopsis genes belonging to 29 gene families were absent in these legume species but these were conserved in the sequenced nonlegume angiosperm lineages. Further evolutionary analyses indicated that the orthologs of these genes were almost completely lost in the Papillionoideae ancestors, thus designated as the legume lost genes (LLGs), and these underwent purifying selection in nonlegume plants. Most LLGs were functionally unknown. In Arabidopsis, two LLGs were well-known genes that played a role in plant immunity such as HARMLESS TO OZONE LAYER 1 and HOPZ-ACTIVATED RESISTANCE 1, and 16 additional LLGs were predicted to participate in plant-pathogen interactions in in silico expression and protein-protein interaction network analyses. Most of these LLGs' orthologs in various plants were also found to be associated with biotic stress response, indicating the conserved role of these genes in plant defense. The evolutionary implication of LLGs during the development of the ability of symbiotic nitrogen fixation involving plant and bacterial interactions, which is a well-known characteristic of most legumes, is also discussed. Our work sheds light on the evolutionary implication of gene loss events in Papilionoideae evolution, as well as provides new insights into crop design to improve nitrogen fixation capacity. |
| 学科主题 | Evolutionary Biology ; Genetics & Heredity |
| 出版地 | OXFORD |
| WOS关键词 | HOMOLOGOUS RECOMBINATION ; PROVIDES INSIGHT ; ORPHAN GENES ; DNA-REPAIR ; ARABIDOPSIS ; PROTEIN ; LEGUME ; PLANT ; EXPRESSION ; SEQUENCE |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000373839200015 |
| 出版者 | OXFORD UNIV PRESS |
| 资助机构 | Chinese Academy of SciencesChinese Academy of Sciences [XDA08010105] ; CAS/SAFEA International Partner Program for Creative Research Teams of Systematic and Evolutionary Botany |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25013]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Grad Univ, Chinese Acad Sci, Yuquan Rd 19, Beijing 100049, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Nanxincun 20, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Gu, Yongzhe,Xing, Shilai,He, Chaoying. Genome-Wide Analysis Indicates Lineage-Specific Gene Loss during Papilionoideae Evolution[J]. GENOME BIOLOGY AND EVOLUTION,2016,8(3):635-648. |
| APA | Gu, Yongzhe,Xing, Shilai,&He, Chaoying.(2016).Genome-Wide Analysis Indicates Lineage-Specific Gene Loss during Papilionoideae Evolution.GENOME BIOLOGY AND EVOLUTION,8(3),635-648. |
| MLA | Gu, Yongzhe,et al."Genome-Wide Analysis Indicates Lineage-Specific Gene Loss during Papilionoideae Evolution".GENOME BIOLOGY AND EVOLUTION 8.3(2016):635-648. |
入库方式： OAI收割
来源：植物研究所
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