De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris
文献类型：期刊论文
| 作者 | Niu, Shan-Ce; Xu, Qing; Zhang, Guo-Qiang; Zhang, Yong-Qiang; Tsai, Wen-Chieh; Hsu, Jui-Ling; Liang, Chieh-Kai; Luo, Yi-Bo ; Liu, Zhong-Jian
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| 刊名 | SCIENTIFIC DATA
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| 出版日期 | 2016 |
| 卷号 | 3 |
| DOI | 10.1038/sdata.2016.83 |
| 文献子类 | Article; Data Paper |
| 英文摘要 | Orchids are renowned for their spectacular flowers and ecological adaptations. After the sequencing of the genome of the tropical epiphytic orchid Phalaenopsis equestris, we combined Illumina HiSeq2000 for RNA-Seq and Trinity for de novo assembly to characterize the transcriptomes for 11 diverse P. equestris tissues representing the root, stem, leaf, flower buds, column, lip, petal, sepal and three developmental stages of seeds. Our aims were to contribute to a better understanding of the molecular mechanisms driving the analysed tissue characteristics and to enrich the available data for P. equestris. Here, we present three databases. The first dataset is the RNA-Seq raw reads, which can be used to execute new experiments with different analysis approaches. The other two datasets allow different types of searches for candidate homologues. The second dataset includes the sets of assembled unigenes and predicted coding sequences and proteins, enabling a sequence-based search. The third dataset consists of the annotation results of the aligned unigenes versus the Nonredundant (Nr) protein database, Kyoto Encyclopaedia of Genes and Genomes (KEGG) and Clusters of Orthologous Groups (COG) databases with low e-values, enabling a name-based search. |
| 学科主题 | Multidisciplinary Sciences |
| 出版地 | BERLIN |
| 电子版国际标准刊号 | 2052-4463 |
| WOS关键词 | EXPRESSION ANALYSIS ; FLOWER BUDS ; FAMILY ; GENERATION ; EPIPHYTISM ; PROTEINS ; ESTS |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000390232700001 |
| 出版者 | NATURE PORTFOLIO |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25038]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.[Tsai, Wen-Chieh 2.Fujian Agr & Forestry Univ, Coll Arts, Coll Landscape Architecture, Fuzhou 350002, Peoples R China 3.South China Agr Univ, Coll Forestry & Landscape Architecture, Guangzhou 510640, Guangdong, Peoples R China 4.Tsinghua Univ, Grad Sch Shenzhen, Ctr Biotechnol & BioMed, Shenzhen 518055, Peoples R China 5.Natl Cheng Kung Univ, Dept Life Sci, Tainan 701, Taiwan 6.Natl Cheng Kung Univ, Orchid Res & Dev Ctr, Tainan 701, Taiwan 7.Natl Cheng Kung Univ, Inst Trop Plant Sci, Tainan 701, Taiwan 8.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 9.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen 518114, Peoples R China 10.Hsu, Jui-Ling |
| 推荐引用方式 GB/T 7714 | Niu, Shan-Ce,Xu, Qing,Zhang, Guo-Qiang,et al. De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris[J]. SCIENTIFIC DATA,2016,3. |
| APA | Niu, Shan-Ce.,Xu, Qing.,Zhang, Guo-Qiang.,Zhang, Yong-Qiang.,Tsai, Wen-Chieh.,...&Liu, Zhong-Jian.(2016).De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris.SCIENTIFIC DATA,3. |
| MLA | Niu, Shan-Ce,et al."De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris".SCIENTIFIC DATA 3(2016). |
入库方式： OAI收割
来源：植物研究所
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