Phylogeny of the Rosidae: A dense taxon sampling analysis
文献类型：期刊论文
| 作者 | Sun, Miao3; Naeem, Rehan5; Su, Jun-Xia; Cao, Zhi-Yong; Burleigh, J. Gordon; Soltis, Pamela S.; Soltis, Douglas E.; Chen, Zhi-Duan
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| 刊名 | JOURNAL OF SYSTEMATICS AND EVOLUTION
 |
| 出版日期 | 2016 |
| 卷号 | 54期号:4页码:363-391 |
| 关键词 | phylogeny rapid radiation Rosidae supermatrix |
| ISSN号 | 1674-4918 |
| DOI | 10.1111/jse.12211 |
| 文献子类 | Article |
| 英文摘要 | Rosidae, a clade of approximately 90 000 species of angiosperms, exhibits remarkable morphological diversity and extraordinary heterogeneity in habitats and life forms. Resolving phylogenetic relationships within Rosidae has been difficult, in large part due to nested radiations and the enormous size of the clade. Current estimates of phylogeny contain areas of poor resolution and/or support, and there have been few attempts to synthesize the available data into a comprehensive view of Rosidae phylogeny. We aim to improve understanding of the phylogeny of Rosidae with a dense sampling scheme using both newly generated sequences and data from GenBank of the chloroplast rbcL, atpB, and matK genes and the mitochondrial matR gene. We combined sequences from 9300 species, representing 2775 genera, 138 families, and 17 orders into a supermatrix. Although 59.26% of the cells in the supermatrix have no data, our results generally agree with previous estimates of Rosidae phylogeny and provide greater resolution and support in several areas of the topology. Several noteworthy phylogenetic relationships are recovered, including some novel relationships. Two families (Euphorbiaceae and Salvadoraceae) and 467 genera are recovered as non-monophyletic in our sampling, suggesting the need for future systematic studies of these groups. Our study shows the value of a botanically informed bioinformatics approach and dense taxonomic sampling for resolving rosid relationships. The resulting tree provides a starting point for large-scale analyses of the evolutionary patterns within Rosidae. |
| 学科主题 | Plant Sciences |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1759-6831 |
| WOS关键词 | NUCLEAR RIBOSOMAL DNA ; INTERNAL TRANSCRIBED SPACER ; MOLECULAR PHYLOGENETICS ; CHARACTER EVOLUTION ; SEQUENCE DATA ; HISTORICAL BIOGEOGRAPHY ; CHLOROPLAST RBCL ; PLASTID MATK ; SENSU-LATO ; EARLY DIVERSIFICATION |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000383771900007 |
| 出版者 | WILEY |
| 资助机构 | National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31590822, 31270268] ; US National Science FoundationNational Science Foundation (NSF) [DEB-1208428] ; Chinese Academy of Sciences Visiting Professorship for Senior International Scientists [2011T1S24] ; State Key Laboratory of Systematic and Evolutionary Botany [LSEB2011-10] ; National Science & Technology Infrastructure - National Specimen Information Infrastructure [2005DKA21400] ; Division Of Integrative Organismal SystemsNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1208428] Funding Source: National Science Foundation |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25083]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Burleigh, J. Gordon; Soltis, Pamela S.; Soltis, Douglas E.] Univ Florida, Genet Inst, Gainesville, FL 32608 USA 2.Kohat Univ Sci & Technol, Dept Biotechnol & Genet Engn, Kohat 26000, Pakistan 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 5.Sun, Miao; Soltis, Pamela S.; Soltis, Douglas E.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 6.Sun, Miao; Burleigh, J. Gordon; Soltis, Douglas E.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA 7.Shanxi Normal Univ, Coll Life Sci, Linfen 041004, Shanxi, Peoples R China |
| 推荐引用方式 GB/T 7714 | Sun, Miao,Naeem, Rehan,Su, Jun-Xia,et al. Phylogeny of the Rosidae: A dense taxon sampling analysis[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4):363-391. |
| APA | Sun, Miao.,Naeem, Rehan.,Su, Jun-Xia.,Cao, Zhi-Yong.,Burleigh, J. Gordon.,...&Chen, Zhi-Duan.(2016).Phylogeny of the Rosidae: A dense taxon sampling analysis.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4),363-391. |
| MLA | Sun, Miao,et al."Phylogeny of the Rosidae: A dense taxon sampling analysis".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016):363-391. |
入库方式： OAI收割
来源：植物研究所
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