COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER
文献类型：期刊论文
| 作者 | Guo, Zhi-You; Zhang, Hong-Rui; Shrestha, Nawal; Zhang, Xian-Chun
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| 刊名 | APPLICATIONS IN PLANT SCIENCES
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| 出版日期 | 2016 |
| 卷号 | 4期号:11 |
| 关键词 | Huperzia serrata lycophytes Lycopodiaceae mutation next-generation sequencing |
| ISSN号 | 2168-0450 |
| DOI | 10.3732/apps.1600071 |
| 文献子类 | Article |
| 英文摘要 | Premise of the study: Here we report the complete chloroplast genome of the important medicinal species Huperzia serrata (Lycopodiaceae) and compare it to the chloroplast genome of the congeneric species H. lucidula. Methods and Results: The whole chloroplast genome of H. serrata was sequenced using an Illumina platform and assembled with Geneious version R9.0.5. The genome size of H. serrata was 154,176 bp, with 36.3% GC content. The complete chloroplast genome contained 120 unique genes, including 86 coding genes, four rRNA genes, and 30 tRNA genes. Comparison with the chloroplast genome of H. lucidula revealed three highly variable regions (rps16-chlB, ycf12-trnR, and ycf1) between these two species and 252 mutation events including 27 insertion/deletion polymorphisms and 225 single-nucleotide polymorphisms (SNPs). Ninety-two SNPs were identified in the gene-coding regions. In addition, 18 microsatellite sites were found, which can potentially be used in phylogeographic studies. Conclusions: The complete chloroplast genome of H. serrata is reported here, and will be a valuable genome resource for further phylogenetic, evolutionary, and medical studies of medicinal plants in the genus Huperzia. |
| 学科主题 | Plant Sciences |
| 出版地 | HOBOKEN |
| WOS关键词 | SELAGINELLA-UNCINATA ; TRNASCAN-SE ; SEQUENCE ; LYCOPHYTE ; SOFTWARE ; PHYLOGENY |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000388509700002 |
| 出版者 | WILEY |
| 资助机构 | Natural Science Foundation of Guizhou Province [[2014]2156] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31470317] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25365]  |
| 专题 | 中科院植物分子生理学重点实验室 |
| 作者单位 | 1.Qiannan Normal Univ Nationalities, Coll Biol Sci & Agr, Duyun 558000, Guizhou, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 3.Zhang, Hong-Rui 4.Shrestha, Nawal 5.[Guo, Zhi-You 6.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| 推荐引用方式 GB/T 7714 | Guo, Zhi-You,Zhang, Hong-Rui,Shrestha, Nawal,et al. COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER[J]. APPLICATIONS IN PLANT SCIENCES,2016,4(11). |
| APA | Guo, Zhi-You,Zhang, Hong-Rui,Shrestha, Nawal,&Zhang, Xian-Chun.(2016).COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER.APPLICATIONS IN PLANT SCIENCES,4(11). |
| MLA | Guo, Zhi-You,et al."COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER".APPLICATIONS IN PLANT SCIENCES 4.11(2016). |
入库方式： OAI收割
来源：植物研究所
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