Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase
文献类型：期刊论文
| 作者 | Jiang, Xingshan; He, Hanjun1; Wang, Ting1,2; Wang, Xiaojing; Wu, Hong1 |
| 刊名 | JOURNAL OF PLANT BIOLOGY
 |
| 出版日期 | 2016 |
| 卷号 | 59期号:2页码:133-142 |
| 关键词 | Arabidopsis thaliana Gene expression Glycosyl hydrolase Microarray Silique dehiscence Transcription factors (TFs) |
| ISSN号 | 1226-9239 |
| DOI | 10.1007/s12374-016-0567-5 |
| 文献子类 | Article |
| 英文摘要 | Fruit dehiscence is an essential developmental process for certain economic crops that dramatically impacts crop yields and involves the altered regulation of thousands of genes and corresponding biological processes. The regulation of fruit dehiscence is complex; although some regulatory genes have been characterized, the overall mechanism is still unknown. In this study, we used microarray analysis to screen the expression patterns of genes during three stages of Arabidopsis thaliana silique dehiscence (stages 11, 15, and 17). Differentially expressed genes (DEGs) were detected, and the combination of functional enrichment analysis with Short Time-series Expression Miner (STEM) clustering analysis was used to explore the overall gene expression changes and related functions during fruit dehiscence. A total of 9 specific gene expression clusters and corresponding functions were found. Moreover, transcription factor (TF) enrichment analysis for these gene clusters showed that two TFs (SEPALLATA3 and AGL15) maybe key regulatory factors for silique dehiscence because they target many glycosyl hydrolases in a certain cluster related to cell wall degradation. Taken together, our data enable connections to be drawn among specic biological functions, genes and TFs, which supports the development of network models to elucidate the process of silique dehiscence. |
| 学科主题 | Plant Sciences |
| 出版地 | HEIDELBERG |
| 电子版国际标准刊号 | 1867-0725 |
| WOS关键词 | BRASSICA-NAPUS L ; CELL-WALL ; FRUIT-DEVELOPMENT ; POD SHATTER ; FLOWER ; DOMAIN ; SENESCENCE ; ABSCISSION ; BETA-1,3-GLUCANASE ; SEPARATION |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000374391300005 |
| 出版者 | SPRINGER HEIDELBERG |
| 资助机构 | Nature Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31070159, 31200151] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25267]  |
| 专题 | 中科院北方资源植物重点实验室 |
| 作者单位 | 1.S China Normal Univ, Coll Life Sci, Guangdong Prov Key Lab Biotechnol Plant Dev, Guangzhou 510631, Guangdong, Peoples R China 2.South China Agr Univ, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangzhou 510642, Guangdong, Peoples R China 3.Chinese Acad Sci, Inst Bot, Key Lab Plant Resources, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Jiang, Xingshan,He, Hanjun,Wang, Ting,et al. Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase[J]. JOURNAL OF PLANT BIOLOGY,2016,59(2):133-142. |
| APA | Jiang, Xingshan,He, Hanjun,Wang, Ting,Wang, Xiaojing,&Wu, Hong.(2016).Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase.JOURNAL OF PLANT BIOLOGY,59(2),133-142. |
| MLA | Jiang, Xingshan,et al."Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase".JOURNAL OF PLANT BIOLOGY 59.2(2016):133-142. |
入库方式： OAI收割
来源：植物研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。