Deep phylogenetic incongruence in the angiosperm clade Rosidae
文献类型：期刊论文
| 作者 | Sun, Miao2; Soltis, Douglas E.; Soltis, Pamela S.; Zhu, Xinyu1; Burleigh, J. Gordon; Chen, Zhiduan
|
| 刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
 |
| 出版日期 | 2015 |
| 卷号 | 83页码:156-166 |
| 关键词 | Hybridization Introgression Incomplete lineage sorting COM clade Incongruence Phylogenomics |
| ISSN号 | 1055-7903 |
| DOI | 10.1016/j.ympev.2014.11.003 |
| 文献子类 | Article |
| 英文摘要 | Analysis of large data sets can help resolve difficult nodes in the tree of life and also reveal complex evolutionary histories. The placement of the Celastrales-Oxalidales-Malpighiales (COM) clade within Rosidae remains one of the most confounding phylogenetic questions in angiosperms, with previous analyses placing it with either Fabidae or Malvidae. To elucidate the position of COM, we assembled multi-gene matrices of chloroplast, mitochondrial, and nuclear sequences, as well as large single- and multi-copy nuclear gene data sets. Analyses of multi-gene data sets demonstrate conflict between the chloroplast and both nuclear and mitochondrial data sets, and the results are robust to various character-coding and data-exclusion treatments. Analyses of single- and multi-copy nuclear loci indicate that most loci support the placement of COM with Malvidae, fewer loci support COM with Fabidae, and almost no loci support COM outside a clade of Fabidae and Malvidae. Although incomplete lineage sorting and ancient introgressive hybridization remain as plausible explanations for the conflict among loci, more complete sampling is necessary to evaluate these hypotheses fully. Our results emphasize the importance of genomic data sets for revealing deep incongruence and complex patterns of evolution. (C) 2014 Elsevier Inc. All rights reserved. |
| 学科主题 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 出版地 | SAN DIEGO |
| 电子版国际标准刊号 | 1095-9513 |
| WOS关键词 | FLORAL STRUCTURAL-CHARACTERIZATION ; COPY NUCLEAR GENES ; PATERNAL INHERITANCE ; SPECIES TREES ; EVOLUTIONARY RELATIONSHIPS ; MATERNAL INHERITANCE ; MITOCHONDRIAL GENOME ; CHLOROPLAST CAPTURE ; MAMMAL PHYLOGENY ; MOLECULAR-DATA |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000350008400014 |
| 出版者 | ACADEMIC PRESS INC ELSEVIER SCIENCE |
| 资助机构 | National Natural Science Foundation of China [NNSF 31270268] ; National Basic Research Program of China [2014CB954101] ; Chinese Academy of Sciences [2011T1S24] ; State Key Laboratory of Systematic and Evolutionary Botany [LSEB2011-10] ; US National Science Foundation [DEB-1301828] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25635]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Univ Florida, Genet Inst, Gainesville, FL 32610 USA 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100039, Peoples R China 4.Univ Florida, Dept Biol, Gainesville, FL 32611 USA 5.Soltis, Douglas E.; Soltis, Pamela S.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 6.Nantong Univ, Sch Life Sci, Nantong 226007, Peoples R China |
| 推荐引用方式 GB/T 7714 | Sun, Miao,Soltis, Douglas E.,Soltis, Pamela S.,et al. Deep phylogenetic incongruence in the angiosperm clade Rosidae[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2015,83:156-166. |
| APA | Sun, Miao,Soltis, Douglas E.,Soltis, Pamela S.,Zhu, Xinyu,Burleigh, J. Gordon,&Chen, Zhiduan.(2015).Deep phylogenetic incongruence in the angiosperm clade Rosidae.MOLECULAR PHYLOGENETICS AND EVOLUTION,83,156-166. |
| MLA | Sun, Miao,et al."Deep phylogenetic incongruence in the angiosperm clade Rosidae".MOLECULAR PHYLOGENETICS AND EVOLUTION 83(2015):156-166. |
入库方式： OAI收割
来源：植物研究所
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