The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos
文献类型：期刊论文
| 作者 | Wu, Miaoli; Lan, Siren; Cai, Bangping2; Chen, Shipin; Chen, Hui; Zhou, Shiliang3 |
| 刊名 | PLOS ONE
 |
| 出版日期 | 2015 |
| 卷号 | 10期号:12 |
| ISSN号 | 1932-6203 |
| DOI | 10.1371/journal.pone.0143792 |
| 文献子类 | Article |
| 英文摘要 | To elucidate chloroplast genome evolution within neotropical-paleotropical bamboos, we fully characterized the chloroplast genome of the woody bamboo Guadua angustifolia. This genome is 135,331 bp long and comprises of an 82,839-bp large single-copy (LSC) region, a 12,898-bp small single-copy (SSC) region, and a pair of 19,797-bp inverted repeats (IRs). Comparative analyses revealed marked conservation of gene content and sequence evolutionary rates between neotropical and paleotropical woody bamboos. The neotropical herbaceous bamboo Cryptochloa strictiflora differs from woody bamboos in IR/SSC boundaries in that it exhibits slightly contracted IRs and a faster substitution rate. The G. angustifolia chloroplast genome is similar in size to that of neotropical herbaceous bamboos but is similar to 3 kb smaller than that of paleotropical woody bamboos. Dissimilarities in genome size are correlated with differences in the lengths of intergenic spacers, which are caused by large-fragment insertion and deletion. Phylogenomic analyses of 62 taxa yielded a tree topology identical to that found in preceding studies. Divergence time estimation suggested that most bamboo genera diverged after the Miocene and that speciation events of extant species occurred during or after the Pliocene. |
| 学科主题 | Multidisciplinary Sciences |
| 出版地 | SAN FRANCISCO |
| WOS关键词 | PHYLOGENETIC ANALYSIS ; PLASTID GENOMES ; GRASSES POACEAE ; RELATIVE RATES ; WOODY BAMBOOS ; LIFE-HISTORY ; EVOLUTION ; BAMBUSOIDEAE ; SEQUENCE ; BIOGEOGRAPHY |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000365926300099 |
| 出版者 | PUBLIC LIBRARY SCIENCE |
| 资助机构 | Forestry Discipline Construction Fund of Fujian Agriculture and Forestry University |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25994]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Fujian Agr & Forestry Univ, Coll Forestry, Fuzhou 350002, Fujian, Peoples R China 3.Xiamen Bot Garden, Xiamen 361000, Fujian, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wu, Miaoli,Lan, Siren,Cai, Bangping,et al. The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos[J]. PLOS ONE,2015,10(12). |
| APA | Wu, Miaoli,Lan, Siren,Cai, Bangping,Chen, Shipin,Chen, Hui,&Zhou, Shiliang.(2015).The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos.PLOS ONE,10(12). |
| MLA | Wu, Miaoli,et al."The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos".PLOS ONE 10.12(2015). |
入库方式： OAI收割
来源：植物研究所
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