Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato
文献类型：期刊论文
| 作者 | Zhang, YueQin4; Wang, CuiPing2,4; Lin, QingFang3,4; Gao, FengHua4; Ma, Yan4; Zhang, Min4; Lin, YueHui4; Ma, QingHu4; Hua, XueJun4 |
| 刊名 | PLANT SCIENCE
 |
| 出版日期 | 2015 |
| 卷号 | 238页码:105-114 |
| ISSN号 | 0168-9452 |
| 关键词 | SKP1 Tomato Phylogenetic analysis Expression analysis Sub-cellular localization Yeast two-hybridization |
| DOI | 10.1016/j.plantsci.2015.06.005 |
| 文献子类 | Article |
| 英文摘要 | SKP1 is a core component of SCF complex, a major type of E3 ubiquitin ligase catalyzing the last step in ubiquitin-mediated protein degradation pathway. In present study, SKP1 gene family in Solanum pimpinellifolium (SSK), a wild species of tomato, was investigated. A total of 19 SSK genes were identified through homologous search. Their chromosomal locations, gene structures, phylogeny, expression profiles, sub-cellular localizations and protein-protein interaction patterns with putative F-box proteins were analyzed in detail. The high homology and similar expression patterns among clustered SSK genes in chromosome suggested that they may have evolved from duplication events and are functionally redundant. Sub-cellular localization indicated that most of the SSK proteins are distributed in both cytosol and nucleus, except for SSK8, which is detected in cytosol only. Tissue-specific expression patterns suggested that many SSK genes may be involved in tomato fruit development. Furthermore, several SSK genes were found to be responsive to heat stress and salicylic acid treatment. Based on phylogenetic analysis, expression profiles and protein interaction property, we proposed that tomato SSK1 and SSK2 might have similar function to ASK1 and ASK2 in Arabidopsis. (C) 2015 Elsevier Ireland Ltd. All rights reserved. |
| 学科主题 | Biochemistry & Molecular Biology ; Plant Sciences |
| 出版地 | CLARE |
| WOS关键词 | F-BOX PROTEIN ; CAENORHABDITIS-ELEGANS ; PROTEASOME PATHWAY ; LEAF SENESCENCE ; SKP1 ; DEGRADATION ; FAMILY ; PATTERNS ; ENCODES ; COMPLEX |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| 出版者 | ELSEVIER IRELAND LTD |
| WOS记录号 | WOS:000360510500011 |
| 资助机构 | National Project for Transgenic Research [2014ZX08009-003] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/25574]  |
| 专题 | 中科院北方资源植物重点实验室 |
| 作者单位 | 1.Ningxia Forestry Inst, State Key Lab Seedling Bioengn, Yinchuan 750004, Peoples R China 2.Univ Chinese Acad Sci, Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Inst Bot, Beijing Bot Garden, Beijing 100093, Peoples R China 4.Chinese Acad Sci, Inst Bot, Key Lab Plant Resources, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhang, YueQin,Wang, CuiPing,Lin, QingFang,et al. Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato[J]. PLANT SCIENCE,2015,238:105-114. |
| APA | Zhang, YueQin.,Wang, CuiPing.,Lin, QingFang.,Gao, FengHua.,Ma, Yan.,...&Hua, XueJun.(2015).Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato.PLANT SCIENCE,238,105-114. |
| MLA | Zhang, YueQin,et al."Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato".PLANT SCIENCE 238(2015):105-114. |
入库方式： OAI收割
来源：植物研究所
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