Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei
文献类型：期刊论文
| 作者 | Wang, Libao4; Li, Hui4; Shi, Wenjun3,4; Qiao, Yi4; Wang, Pan2,4; Yu, Zhijun2,4; Zhao, Ran2,4; Hu, Runhao2,4; Shen, Hui4; Cheng, Jie4 |
| 刊名 | AQUACULTURE INTERNATIONAL
 |
| 出版日期 | 2022-10-08 |
| 页码 | 24 |
| ISSN号 | 0967-6120 |
| 关键词 | Enterocytozoon hepatopenaei Whole-genome sequencing Comparative genomics Litopenaeus vannamei |
| DOI | 10.1007/s10499-022-00990-9 |
| 通讯作者 | Wan, Xihe(wxh1708@163.com) |
| 英文摘要 | Enterocytozoon hepatopenaei (EHP) is an obligate intracellular parasite of shrimp, that may cause growth retardation or even death of shrimp. However, the characteristics of the EHP genome and its evolutionary relationships with other microsporidian genomes are not well understood. In this research, the whole genome of a strain of EHP isolated from Litopenaeus vannamei was sequenced, and detailed functional annotation was performed by using different public databases and genome component analysis. The genome size was 3.03 Mb, with 15 contigs and 2283 protein-coding genes. There were 46 tRNAs and 14 rRNAs (including 6 5S rRNAs, 4 18S rRNAs, and 4 28S rRNAs) in the genome. In addition, details of EHP evolution were revealed by comparative genomic analysis, including analyses of gene family clustering, phylogenetic relationships, gene family expansion and contraction, and synteny. The results will deepen our understanding of the EHP genome and its evolutionary features. |
| WOS关键词 | PACIFIC WHITE SHRIMP ; TANDEM REPEATS ; HEPATOPANCREATIC NECROSIS ; NONCODING RNA ; MICROSPORIDIA ; ANNOTATION ; DATABASE ; PROGRAM ; GENES ; TOOL |
| WOS研究方向 | Fisheries |
| 语种 | 英语 |
| WOS记录号 | WOS:000864984600001 |
| 资助机构 | Jiangsu Agricultural Science and Technology Innovation Fund ; Six Talent Peaks of Jiangsu Province 2019 ; Earmarked Fund for Jiangsu Agricultural Industry Technology System ; Jiangsu Seed Industry Revitalization Project ; Subei Science and Technology Special Pilot Project |
| 源URL | [http://ir.yic.ac.cn/handle/133337/31766]  |
| 专题 | 烟台海岸带研究所_中科院烟台海岸带研究所知识产出 |
| 通讯作者 | Wan, Xihe |
| 作者单位 | 1.Huazhong Agr Univ, Coll Fisheries, Wuhan, Hubei, Peoples R China 2.Shanghai Ocean Univ, Natl Demonstrat Ctr Expt Fisheries Sci Educ, Shanghai, Peoples R China 3.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai, Peoples R China 4.Inst Oceanol & Marine Fisheries, 31 Jiaoyu Rd, Nantong 226007, Jiangsu, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang, Libao,Li, Hui,Shi, Wenjun,et al. Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei[J]. AQUACULTURE INTERNATIONAL,2022:24. |
| APA | Wang, Libao.,Li, Hui.,Shi, Wenjun.,Qiao, Yi.,Wang, Pan.,...&Wan, Xihe.(2022).Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei.AQUACULTURE INTERNATIONAL,24. |
| MLA | Wang, Libao,et al."Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei".AQUACULTURE INTERNATIONAL (2022):24. |
入库方式： OAI收割
来源：烟台海岸带研究所
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