Complete mitochondrial genomes of four deep-sea echinoids: conserved mitogenome organization and new insights into the phylogeny and evolution of Echinoidea
文献类型：期刊论文
| 作者 | Sun, Shao'e; Xiao, Ning; Sha, Zhongli4
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| 刊名 | PEERJ
 |
| 出版日期 | 2022-07-28 |
| 卷号 | 10页码:22 |
| 关键词 | Echinoidea Deep-sea Mitochondrial genome Phylogenetic relationship Evolution |
| ISSN号 | 2167-8359 |
| DOI | 10.7717/peerj.13730 |
| 通讯作者 | Sha, Zhongli(shazl@qdio.ac.cn) |
| 英文摘要 | Echinoids are an important component in benthic marine environments, which occur at all depths from the shallow-water hard substrates to abyssal depths. To date, the phylogeny of the sea urchins and the macro-evolutionary processes of deep-sea and shallow water groups have not yet been fully resolved. In the present study, we sequenced the complete mitochondrial genomes (mitogenomes) of four deep-sea sea urchins (Echinoidea), which were the first representatives of the orders Aspidodiadematoida, Pedinoida and Echinothurioida, respectively. The gene content and arrangement were highly conserved in echinoid mitogenomes. The tRNA-Ser(AGY) with DHU arm was detected in the newly sequenced echinoid mitogenomes, representing an ancestral structure of tRNA-Ser(AGY). No difference was found between deep-sea and shallow water groups in terms of base composition and codon usage. The phylogenetic analysis showed that all the orders except Spatangoida were monophyletic. The basal position of Cidaroida was supported. The closest relationship of Scutelloida and Echinolampadoida was confirmed. Our phylogenetic analysis shed new light on the position of Arbacioida, which supported that Arbacioida was most related with the irregular sea urchins instead of Stomopneustoida. The position Aspidodiadematoida (((Aspidodiadematoida + Pedinoida) + Echinothurioida) + Diadematoida) revealed by mitogenomic data discredited the hypothesis based on morphological evidences. The macro-evolutionary pattern revealed no simple onshore-offshore or an opposite hypothesis. But the basal position of the deep-sea lineages indicated the important role of deep sea in generating the current diversity of the class Echinoidea. |
| 资助项目 | Chinese Academy of Sciences[QYZDB-SSWDQC036] ; National Science Foundation for Distinguished Young Scholars[42025603] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB42000000] ; Key Research Program of Frontier Sciences |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:000835171100001 |
| 出版者 | PEERJ INC |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/179845]  |
| 专题 | 海洋研究所_海洋生物分类与系统演化实验室 |
| 通讯作者 | Sha, Zhongli |
| 作者单位 | 1.Univ Chinese Acad Sci, Coll Biol Sci, Beijing, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Dept Marine Organism Taxon & Phylogeny, Qingdao, Peoples R China |
| 推荐引用方式 GB/T 7714 | Sun, Shao'e,Xiao, Ning,Sha, Zhongli. Complete mitochondrial genomes of four deep-sea echinoids: conserved mitogenome organization and new insights into the phylogeny and evolution of Echinoidea[J]. PEERJ,2022,10:22. |
| APA | Sun, Shao'e,Xiao, Ning,&Sha, Zhongli.(2022).Complete mitochondrial genomes of four deep-sea echinoids: conserved mitogenome organization and new insights into the phylogeny and evolution of Echinoidea.PEERJ,10,22. |
| MLA | Sun, Shao'e,et al."Complete mitochondrial genomes of four deep-sea echinoids: conserved mitogenome organization and new insights into the phylogeny and evolution of Echinoidea".PEERJ 10(2022):22. |
入库方式： OAI收割
来源：海洋研究所
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