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Metagenomics reveals the increased antibiotics resistome through prokaryote rather than virome after overuse of rare earth element compounds

文献类型：期刊论文

作者Song, Alin5; Peng, Jingjing4; Si, Zhiyuan5; Xu, Duanyang3; Sun, Miaomiao5; Zhang, Jiayin5; Wang, Sai5; Wang, Enzhao5; Bi, Jingjing5; Chong, Fayao2
刊名SCIENCE OF THE TOTAL ENVIRONMENT
出版日期2023-03-10
卷号863页码:9
关键词Rare earth Virus Metal resistance gene Antibiotics resistance gene Metagenomics
ISSN号0048-9697
DOI10.1016/j.scitotenv.2022.160704
通讯作者Fan, Fenliang(fanfenliang@caas.cn)
英文摘要Rare earth elements (REE) are extensively exploited in the agricultural ecosystems due to their various beneficial roles on plant growth. However, the ecotoxicological effects and environmental risk of REE are poorly assessed. Here, we inves-tigated the effects of lanthanum and cerium nitrate on soil prokaryote and viral metal resistance genes (MRGs) and anti-biotics resistance genes (ARGs) using a metagenomic-based approach. We found that relative abundances of prokaryote phyla Bacteroidetes and Chloroflexi decreased with increasing of both REE compounds. In addition, low level REE nitrate (0.05 and 0.1 mmol kg-1 soil) inhibited the viral family Phycodanaviridae, Rudiviridae, Schitoviridae, whereas high level (0.16 and 0.32 mmol kg-1 soil) REE nitrate suppressed the viral family Herelleviridae, Iridoviridae, Podoviridae. ARGs were not significantly affected by low level of REE nitrate. However, high level of both REEs nitrate increased the abundances of dominant prokaryote genes resisting to most of the drug classes, such as aminoglycoside, elfamycin, fluoroquinolone, macrolide, rifamycin. Abundance of MRGs in prokaryote did not change consistently with REE nitrate compound type and input rate. MRGs were only partially detected in the virome in some of the treatments, while ARGs was not detected in virome. Together, we demonstrated that overuse of REE nitrate in agriculture would increase the risk of dissemination of ARGs through prokaryotes but not virus, although viral community was substantially shifted.
WOS关键词RESISTANCE GENES ; BACTERIAL COMMUNITY ; HEAVY-METALS ; SOIL ; NANOPARTICLES ; COSELECTION ; PROTEIN
资助项目Agricultural Science and Technology Innovation Program (ASTIP)[CAAS-ZDRW202202] ; National Key Research and Development Program of China[2021YFF1000404] ; National Key Research and Development Program of China[2021YFD1901004] ; Fundamental Research Funds for Central Non-profit Scientific Institution[1610132019011] ; Fundamental Research Funds for Central Non-profit Scientific Institution[1610132020012]
WOS研究方向Environmental Sciences & Ecology
语种英语
WOS记录号WOS:000901677100003
出版者ELSEVIER
资助机构Agricultural Science and Technology Innovation Program (ASTIP) ; National Key Research and Development Program of China ; Fundamental Research Funds for Central Non-profit Scientific Institution
源URL[http://ir.igsnrr.ac.cn/handle/311030/189009]  
专题中国科学院地理科学与资源研究所
通讯作者Fan, Fenliang
作者单位1.South Zhongguancun St 12, Beijing 100081, Peoples R China
2.China North Rare Earth Hi Tech Co Ltd, Baotou 014030, Peoples R China
3.Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Beijing 100101, Peoples R China
4.China Agr Univ, Natl Acad Agr Green Dev, Coll Resources & Environm Sci, Key Lab Plant Soil Interact,Minist Educ, Beijing 100193, Peoples R China
5.Chinese Acad Agr Sci, Inst Agr Resources & Reg Planning, Key Lab Plant Nutr & Fertilizer, Minist Agr, Beijing 100081, Peoples R China
推荐引用方式
GB/T 7714		 Song, Alin,Peng, Jingjing,Si, Zhiyuan,et al. Metagenomics reveals the increased antibiotics resistome through prokaryote rather than virome after overuse of rare earth element compounds[J]. SCIENCE OF THE TOTAL ENVIRONMENT,2023,863:9.
APA Song, Alin.,Peng, Jingjing.,Si, Zhiyuan.,Xu, Duanyang.,Sun, Miaomiao.,...&Fan, Fenliang.(2023).Metagenomics reveals the increased antibiotics resistome through prokaryote rather than virome after overuse of rare earth element compounds.SCIENCE OF THE TOTAL ENVIRONMENT,863,9.
MLA Song, Alin,et al."Metagenomics reveals the increased antibiotics resistome through prokaryote rather than virome after overuse of rare earth element compounds".SCIENCE OF THE TOTAL ENVIRONMENT 863(2023):9.

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来源：地理科学与资源研究所

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