NOVOWrap: An automated solution for plastid genome assembly and structure standardization
文献类型：期刊论文
| 作者 | Wu, Ping2; Chen, Hao; Xu, Chao1; Yang, Jie2; Zhang, Xian Chun2; Zhou, Shi Liang2 |
| 刊名 | MOLECULAR ECOLOGY RESOURCES
 |
| 出版日期 | 2021 |
| 卷号 | 21期号:6页码:2177-2186 |
| 关键词 | assembly plastid genome standardized structure |
| ISSN号 | 1755-098X |
| DOI | 10.1111/1755-0998.13410 |
| 文献子类 | Article |
| 英文摘要 | Plastid genomes play an important role in genomics and evolutionary biology. Next-generation sequencing has revolutionized plastid genomic data acquisition to the point that genome assembly has become a bottleneck for widespread utilization of plastid genome data. To solve this problem, we developed an open-source, cross-platform tool known as, NOVOWrap, which includes both command-line and graphical interfaces for automatically assembling plastid genomes on personal computers. With minimal inputs, settings, and user intervention, NOVOWrap can automatically assemble plastid genomes, validate results and standardize the structure using affordable computer resources. The performance of this software has been successfully benchmarked against the plastid genomes of 11 species belonging to lycopods, gymnosperms, and angiosperms. By liberating researchers from laborious and cumbersome computer manipulations and create reliable and standardized genomic data, NOVOWrap is expected to accelerate plastid genome assembly, ease the process of data exchange, and contribute to downstream analysis. |
| 学科主题 | Biochemistry & Molecular Biology ; Ecology ; Evolutionary Biology |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1755-0998 |
| WOS关键词 | CHLOROPLAST GENOME ; INVERTED REPEAT ; EXPANSION ; RATES |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000653966300001 |
| 出版者 | WILEY |
| 资助机构 | National Natural Science Foundation of China [31872679] ; Strategic Priority Research Program of Chinese Academy of Sciences [XDA19050303, XDA23080204] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/26394]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Univ Chinese Acad Sci, Beijing, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 3.Shaanxi Univ Sci & Technol, Xian, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wu, Ping,Chen, Hao,Xu, Chao,et al. NOVOWrap: An automated solution for plastid genome assembly and structure standardization[J]. MOLECULAR ECOLOGY RESOURCES,2021,21(6):2177-2186. |
| APA | Wu, Ping,Chen, Hao,Xu, Chao,Yang, Jie,Zhang, Xian Chun,&Zhou, Shi Liang.(2021).NOVOWrap: An automated solution for plastid genome assembly and structure standardization.MOLECULAR ECOLOGY RESOURCES,21(6),2177-2186. |
| MLA | Wu, Ping,et al."NOVOWrap: An automated solution for plastid genome assembly and structure standardization".MOLECULAR ECOLOGY RESOURCES 21.6(2021):2177-2186. |
入库方式： OAI收割
来源：植物研究所
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