Plastid phylogenomics provides novel insights into the infrafamilial relationship of Polypodiaceae
文献类型：期刊论文
| 作者 | Wei, Ran; Yang, Jie; He, Li-Juan; Liu, Hong-Mei; Hu, Jia-Yu; Liang, Si-Qi; Wei, Xue-Ping; Zhao, Cun-Feng; Zhang, Xian-Chun
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| 刊名 | CLADISTICS
 |
| 出版日期 | 2021 |
| 卷号 | 37期号:6页码:717-727 |
| ISSN号 | 0748-3007 |
| DOI | 10.1111/cla.12461 |
| 文献子类 | Article |
| 英文摘要 | The polygrammoids (Polypodiaceae) are the most species-rich and diversified epiphytic fern lineages, and hold an important role to understand the deep diverging events and rapid adaptation to changing environments in the plant tree of life. Despite progress in the phylogeny of this group of ferns in previous multilocus phylogenetic studies, uncertainty remains especially in backbone relationships among closely related clades, and the phylogenetic placement of recalcitrant species or lineages. Here, we investigated the deep phylogenetic relationships within Polypodiaceae by sampling all major lineages and using 81 plastid genomes (plastomes), of which 70 plastomes were newly sequenced with high-throughput sequencing technology. Based on parsimony, maximum-likelihood, Bayesian and multispecies coalescent analyses of genome skimming data, we achieved a better resolution of the backbone phylogeny of Polypodiaceae. Using simulated data matrices, we detected that potential phylogenetic artefacts, such as long-branch attraction and insufficient taxonomic sampling, may have a confounding impact on the incongruence of phylogenetic inferences. Furthermore, our phylogenetic analyses offer greater resolution than previous multilocus studies, providing a robust framework for future phylogenetic implications on the subfamilial taxonomy of Polypodiaceae. Our phylogenomic study not only demonstrates the advantage of a character-rich plastome dataset for resolving the recalcitrant lineages that have undergone rapid radiation, but also sheds new light on integrative explorations understanding the evolutionary history of large fern groups in the genomic era. |
| 学科主题 | Evolutionary Biology ; Zoology |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1096-0031 |
| WOS关键词 | POLYGRAMMOID FERNS POLYPODIACEAE ; GRAMMITID FERNS ; MOLECULAR PHYLOGENY ; DEEP RELATIONSHIPS ; RAPID RADIATION ; SEQUENCE ; RESOLVE ; EVOLUTION ; GENERA ; GENUS |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000648344000001 |
| 出版者 | WILEY |
| 资助机构 | National Science Foundation of China (NSFC) [31872651, 31670205, 31470317, 31900193] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/26495]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.[Wei, Ran 2.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Menglun 666303, Yunnan, Peoples R China 3.Chinese Acad Med Sci, Inst Med Plant Dev, Key Lab Bioact Subst & Resources Utilizat Chinese, Minist Educ,Peking Union Med Coll, Beijing 100193, Peoples R China 4.Plant Product Key Lab Xiamen, Xiamen 361002, Fujian, Peoples R China 5.Liang, Si-Qi 6.Yang, Jie 7.Xiamen Overseas Chinese Subtrop Plant Intro Garde, Plant Intro & Quarantine, Xiamen 361002, Fujian, Peoples R China 8.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 9.[Yang, Jie 10.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wei, Ran,Yang, Jie,He, Li-Juan,et al. Plastid phylogenomics provides novel insights into the infrafamilial relationship of Polypodiaceae[J]. CLADISTICS,2021,37(6):717-727. |
| APA | Wei, Ran.,Yang, Jie.,He, Li-Juan.,Liu, Hong-Mei.,Hu, Jia-Yu.,...&Zhang, Xian-Chun.(2021).Plastid phylogenomics provides novel insights into the infrafamilial relationship of Polypodiaceae.CLADISTICS,37(6),717-727. |
| MLA | Wei, Ran,et al."Plastid phylogenomics provides novel insights into the infrafamilial relationship of Polypodiaceae".CLADISTICS 37.6(2021):717-727. |
入库方式： OAI收割
来源：植物研究所
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