Chloroplast genome variation and phylogenetic relationships of Atractylodes species
文献类型：期刊论文
| 作者 | Wang, Yiheng; Wang, Sheng; Liu, Yanlei1; Yuan, Qingjun; Sun, Jiahui; Guo, Lanping |
| 刊名 | BMC GENOMICS
 |
| 出版日期 | 2021 |
| 卷号 | 22期号:1 |
| 关键词 | Traditional herbal medicine Chloroplast markers Simple sequence repeat Indel Interspecific relationships |
| ISSN号 | 1471-2164 |
| DOI | 10.1186/s12864-021-07394-8 |
| 文献子类 | Article |
| 英文摘要 | BackgroundAtractylodes DC is the basic original plant of the widely used herbal medicines Baizhu and Cangzhu and an endemic genus in East Asia. Species within the genus have minor morphological differences, and the universal DNA barcodes cannot clearly distinguish the systemic relationship or identify the species of the genus. In order to solve these question, we sequenced the chloroplast genomes of all species of Atractylodes using high-throughput sequencing.ResultsThe results indicate that the chloroplast genome of Atractylodes has a typical quadripartite structure and ranges from 152,294bp (A. carlinoides) to 153,261bp (A. macrocephala) in size. The genome of all species contains 113 genes, including 79 protein-coding genes, 30 transfer RNA genes and four ribosomal RNA genes. Four hotspots, rpl22-rps19-rpl2, psbM-trnD, trnR-trnT((GGU)), and trnT((UGU))-trnL, and a total of 42-47 simple sequence repeats (SSR) were identified as the most promising potentially variable makers for species delimitation and population genetic studies. Phylogenetic analyses of the whole chloroplast genomes indicate that Atractylodes is a clade within the tribe Cynareae; Atractylodes species form a monophyly that clearly reflects the relationship within the genus.ConclusionsOur study included investigations of the sequences and structural genomic variations, phylogenetics and mutation dynamics of Atractylodes chloroplast genomes and will facilitate future studies in population genetics, taxonomy and species identification. |
| 学科主题 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 出版地 | LONDON |
| WOS关键词 | PLASTID GENOMES ; TRNL-F ; DNA ; SEQUENCE ; SOFTWARE ; UTILITY ; POLYMORPHISM ; PERFORMANCE ; RESOURCES ; ALGORITHM |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000617216900002 |
| 出版者 | BMC |
| 资助机构 | National Natural Science Foundation of China [81891014, 81874337] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/26572]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, Beijing 100700, Peoples R China 2.Chinese Acad Sci, State Key Lab Systemat & Evolutionary Bot, Inst Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang, Yiheng,Wang, Sheng,Liu, Yanlei,et al. Chloroplast genome variation and phylogenetic relationships of Atractylodes species[J]. BMC GENOMICS,2021,22(1). |
| APA | Wang, Yiheng,Wang, Sheng,Liu, Yanlei,Yuan, Qingjun,Sun, Jiahui,&Guo, Lanping.(2021).Chloroplast genome variation and phylogenetic relationships of Atractylodes species.BMC GENOMICS,22(1). |
| MLA | Wang, Yiheng,et al."Chloroplast genome variation and phylogenetic relationships of Atractylodes species".BMC GENOMICS 22.1(2021). |
入库方式： OAI收割
来源：植物研究所
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