Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice
文献类型：期刊论文
| 作者 | Geng, Mu-Fan; Wang, Xiu-Hua; Wang, Mei-Xia; Cai, Zhe; Meng, Qing-Lin; Wang, Xin; Zhou, Lian; Han, Jing-Dan; Li, Ji-Long; Zhang, Fu-Min |
| 刊名 | ENVIRONMENTAL AND EXPERIMENTAL BOTANY
 |
| 出版日期 | 2021 |
| 卷号 | 189 |
| ISSN号 | 0098-8472 |
| 关键词 | Drought stress RNA-seq WGCNA Genomic hotspot Cultivated and wild rice |
| DOI | 10.1016/j.envexpbot.2021.104555 |
| 文献子类 | Article |
| 英文摘要 | Whole transcriptomic sequencing of the drought-tolerant (DT) and drought-sensitive (DS) accessions of cultivated and wild rice under drought treatments was performed to uncover the mechanism of plant adaptation to drought and to facilitate the development of drought-tolerant cultivars in crops. By analyzing the differentially expressed genes (DEGs) between the drought-treated and untreated samples and their co-expressed pattern, we revealed distinct susceptibilities of different samples to the stress treatments and identified some specific transcription factors (TFs) and genes that play critical roles in rice adaptation to drought. Some drought-responsive genes or pathways unique to the wild rice were also detected, highlighting the importance of wild rice resources in developing elite cultivars. Furthermore, we showed that the DEGs in the DT accessions were enriched in the genome as clusters or hotspots in which previously identified drought-associated quantitative trait loci (QTLs) were overrepresented. The finding that a single hotspot contained up to 52 QTLs and involved as many as 20 traits implicates the complicated genetic architecture underlying the DT traits. These results provide new insights into the understanding of plant adaptation to drought and help effective manipulation of specific genes or gene cluster in crop breeding. |
| 学科主题 | Plant Sciences ; Environmental Sciences |
| 电子版国际标准刊号 | 1873-7307 |
| 出版地 | OXFORD |
| WOS关键词 | CUTICULAR WAX BIOSYNTHESIS ; GENE-EXPRESSION ; TOLERANCE ; ACID ; IDENTIFICATION ; DIVERGENCE ; RESISTANCE ; PHYSIOLOGY ; GERMPLASM ; CLUSTERS |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| 出版者 | PERGAMON-ELSEVIER SCIENCE LTD |
| WOS记录号 | WOS:000672596400008 |
| 资助机构 | Chinese Academy of Sciences [XDB31000000, XDA08020103] ; National Natural Science Foundation of China [91731301] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/26727]  |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.Li, Ji-Long 2.[Geng, Mu-Fan 3.Wang, Xiu-Hua 4.Wang, Mei-Xia 5.Cai, Zhe 6.Meng, Qing-Lin 7.Wang, Xin 8.Zhou, Lian 9.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 10.Chinese Acad Sci, Inst Bot, State Key Lab Syst & Evolutionary Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Geng, Mu-Fan,Wang, Xiu-Hua,Wang, Mei-Xia,et al. Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice[J]. ENVIRONMENTAL AND EXPERIMENTAL BOTANY,2021,189. |
| APA | Geng, Mu-Fan.,Wang, Xiu-Hua.,Wang, Mei-Xia.,Cai, Zhe.,Meng, Qing-Lin.,...&Ge, Song.(2021).Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice.ENVIRONMENTAL AND EXPERIMENTAL BOTANY,189. |
| MLA | Geng, Mu-Fan,et al."Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice".ENVIRONMENTAL AND EXPERIMENTAL BOTANY 189(2021). |
入库方式： OAI收割
来源：植物研究所
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