Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years
文献类型：期刊论文
| 作者 | Zhang, Xinxin1; Wang, Tianzuo1,3 |
| 刊名 | PLANT AND CELL PHYSIOLOGY
 |
| 出版日期 | 2021 |
| 卷号 | 62期号:11页码:1648-1661 |
| 关键词 | Chromatin conformation capture (3C)-based techniques Chromatin positioning Configurations Domains Genome structures Three-dimensional (3D) chromatin organization |
| ISSN号 | 0032-0781 |
| DOI | 10.1093/pcp/pcab134 |
| 文献子类 | Review |
| 英文摘要 | Over the past few decades, eukaryotic linear genomes and epigenomes have been widely and extensively studied for understanding gene expression regulation. More recently, the three-dimensional (3D) chromatin organization was found to be important for determining genome functionality, finely tuning physiological processes for appropriate cellular responses. With the development of visualization techniques and chromatin conformation capture (3C)-based techniques, increasing evidence indicates that chromosomal architecture characteristics and chromatin domains with different epigenetic modifications in the nucleus are correlated with transcriptional activities. Subsequent studies have further explored the intricate interplay between 3D genome organization and the function of interacting regions. In this review, we summarize spatial distribution patterns of chromatin, including chromatin positioning, configurations and domains, with a particular focus on the effect of a unique form of interaction between varieties of factors that shape the 3D genome conformation in plants. We further discuss the methods, advantages and limitations of various 3C-based techniques, highlighting the applications of these technologies in plants to identify chromatin domains, and address their dynamic changes and functional implications in evolution, and adaptation to development and changing environmental conditions. Moreover, the future implications and emerging research directions of 3D genome organization are discussed. |
| 学科主题 | Plant Sciences ; Cell Biology |
| 出版地 | OXFORD |
| 电子版国际标准刊号 | 1471-9053 |
| WOS关键词 | GENOME-WIDE ANALYSIS ; INTERPHASE CHROMOSOMES ; ARABIDOPSIS-THALIANA ; TRANSCRIPTION SITES ; PHASE-SEPARATION ; X-CHROMOSOME ; GENE LOOP ; ARCHITECTURE ; DOMAINS ; REVEALS |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000734079300002 |
| 出版者 | OXFORD UNIV PRESS |
| 资助机构 | National Natural Science Foundation of China [32070351] ; Science and Technology Program of Inner Mongolia [2021GG0372] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/26357]  |
| 专题 | 植被与环境变化国家重点实验室 |
| 作者单位 | 1.Peking Univ, Peking Tsinghua Ctr Life Sci, Sch Adv Agr Sci & Sch Life Sci, State Key Lab Prot & Plant Gene Res, Beijing 100871, Peoples R China 2.Univ Chinese Acad Sci, Coll Resources & Environm, Beijing 100093, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Vegetat & Environm Change, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhang, Xinxin,Wang, Tianzuo. Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years[J]. PLANT AND CELL PHYSIOLOGY,2021,62(11):1648-1661. |
| APA | Zhang, Xinxin,&Wang, Tianzuo.(2021).Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years.PLANT AND CELL PHYSIOLOGY,62(11),1648-1661. |
| MLA | Zhang, Xinxin,et al."Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years".PLANT AND CELL PHYSIOLOGY 62.11(2021):1648-1661. |
入库方式： OAI收割
来源：植物研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。