The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine
文献类型：期刊论文
| 作者 | Wang, Yi2,10; Xin, Haiping9; Fan, Peige10; Zhang, Jisen1; Liu, Yongbo4; Dong, Yang5; Wang, Zemin2,10; Yang, Yingzhen; Zhang, Qing1; Ming, Ray1,3 |
| 刊名 | PLANT JOURNAL
 |
| 出版日期 | 2021 |
| 卷号 | 105期号:6页码:1495-1506 |
| ISSN号 | 0960-7412 |
| 关键词 | Vitis amurensis genome cold and freezing tolerance PGK |
| DOI | 10.1111/tpj.15127 |
| 文献子类 | Article |
| 英文摘要 | Vitis amurensis (Shanputao) is the most cold tolerant Vitis species and so is of great interest to grape breeders and producers in areas with low winter temperatures. Here, we report its high-quality, chromosome-level genome assembly based on a combination of sequence data from Illumina and PacBio platforms, BioNano optical mapping and high-throughput chromosome conformation Capture (Hi-C) mapping. The 604.56-Mb genome contains 32 885 protein-coding genes. Shanputao was found to share a common ancestor with PN40024 (V. vinifera) approximately 2.17-2.91 million years ago, and gene expansion observed in Shanputao might contribute to the enhancement of cold tolerance. Transcriptome analysis revealed 17 genes involved in cold signal transduction, suggesting that there was a different response mechanism to chilling temperature and freezing conditions. Furthermore, a genome-wide association study uncovered a phosphoglycerate kinase gene that may contribute to the freezing resistance of buds in the winter. The Shanputao genome sequence not only represents a valuable resource for grape breeders, but also is important for clarifying the molecular mechanisms involved in cold tolerance. |
| 学科主题 | Plant Sciences |
| 电子版国际标准刊号 | 1365-313X |
| 出版地 | HOBOKEN |
| WOS关键词 | DRAFT GENOME ; SEQUENCE ; GENE ; ANNOTATION ; ALIGNMENT ; SYSTEM ; IDENTIFICATION ; EXPRESSION ; DIVERSITY ; TOOLKIT |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| 出版者 | WILEY |
| WOS记录号 | WOS:000609904100001 |
| 资助机构 | National Key Research and Development Program of China [2018YFD1000105, 2018YFD1000300, 2019YFD1002501] ; Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China [2019HJ2096001006] ; National Science Foundation of China [32025032] ; Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203] ; Bureau of International Cooperation, The Chinese Academy of Sciences [151111KYSB20170032] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/26346]  |
| 专题 | 中科院北方资源植物重点实验室 |
| 作者单位 | 1.Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA 2.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, CAS Key Lab Plant Resources, Beijing 100093, Peoples R China 3.Chinese Acad Sci, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan Bot Garden, Wuhan 430074, Peoples R China 4.Fujian Agr & Forestry Univ, Ctr Genom & Biotechnol, Haixia Inst Sci & Technol, Fujian Prov Key Lab Haixia Appl Plant Syst Biol, Fuzhou 350002, Peoples R China 5.Chinese Res Inst Environm Sci, State Key Lab Environm Criteria & Risk Assessment, 8 Dayangfang, Beijing 100012, Peoples R China 6.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China 7.Yunnan Agr Univ, State Key Lab Conservat & Utilizat Bioresources Y, Kunming 650201, Yunnan, Peoples R China 8.USDA ARS, Grape Genet Res Unit, Geneva, NY USA 9.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 10.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, Beijing Key Lab Grape Sci & Enol, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang, Yi,Xin, Haiping,Fan, Peige,et al. The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine[J]. PLANT JOURNAL,2021,105(6):1495-1506. |
| APA | Wang, Yi.,Xin, Haiping.,Fan, Peige.,Zhang, Jisen.,Liu, Yongbo.,...&Liang, Zhenchang.(2021).The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine.PLANT JOURNAL,105(6),1495-1506. |
| MLA | Wang, Yi,et al."The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine".PLANT JOURNAL 105.6(2021):1495-1506. |
入库方式： OAI收割
来源：植物研究所
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