Identification of nuclear low-copy genes and their phylogenetic utility in rosids
文献类型：期刊论文
| 作者 | Wang, Baohua; Zhang, Yan; Wei, Peipei; Sun, Miao1; Ma, Xiaofei2; Zhu, Xinyu |
| 刊名 | GENOME
 |
| 出版日期 | 2014 |
| 卷号 | 57期号:10页码:547-554 |
| 关键词 | rosids low-copy nuclear gene KOGs phylogenetics |
| ISSN号 | 0831-2796 |
| DOI | 10.1139/gen-2014-0138 |
| 文献子类 | Article |
| 英文摘要 | By far, the interordinal relationships in rosids remain poorly resolved. Previous studies based on chloroplast, mitochondrial, and nuclear DNA has produced conflicting phylogenetic resolutions that has become a widely concerned problem in recent phylogenetic studies. Here, a total of 96 single-copy nuclear gene loci were identified from the KOG (eukaryotic orthologous groups) database, most of which were first used for phylogenetic analysis of angiosperms. The orthologous sequence datasets from completely sequenced genomes of rosids were assembled for the resolution of the position of the COM (Celastrales-Oxalidales-Malpighiales) clade in rosids. Our analysis revealed strong and consistent support for CM topology (the COM clade as sister to the malvids). Our results will contribute to further exploring the underlying cause of conflict between chloroplast, mitochondrial, and nuclear data. In addition, our study identified a few novel nuclear molecular markers with potential to investigate the deep phylogenetic relationship of plants or other eukaryotic taxonomical groups. |
| 学科主题 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 出版地 | OTTAWA |
| 电子版国际标准刊号 | 1480-3321 |
| WOS关键词 | MAXIMUM-LIKELIHOOD ; TREE ; INFERENCE ; SEQUENCE ; RECONSTRUCTION ; PHYLOGENOMICS ; ORIGIN ; DIVERSIFICATION ; INCONGRUENCE ; CONCORDANCE |
| WOS研究方向 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000350992400003 |
| 出版者 | CANADIAN SCIENCE PUBLISHING |
| 资助机构 | State Key Laboratory of Systematic and Evolutionary Botany [LSEB2011-10] ; National Natural Science Foundation of China [NSFC 31000729, NNSF 31270268, 31061160184] ; Natural Science Foundation of Jiangsu Province of China [BK20131204] ; Practice Innovation Training Program Projects for the Jiangsu College Students [201310304042Z] ; Ministry of Agricultural Scientific Observing and Experimental Station of Maize in Plain Area of Southern Region, Nantong University, P.R. China [NT201410] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/27246]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Nantong Univ, Sch Life Sci, Nantong 226019, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 3.Chinese Acad Sci, Cold & Arid Reg Environm & Engn Res Inst, Dept Ecol & Agr Res, Key Lab Stress Physiol & Ecol Cold & Arid Reg, Lanzhou 730000, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang, Baohua,Zhang, Yan,Wei, Peipei,et al. Identification of nuclear low-copy genes and their phylogenetic utility in rosids[J]. GENOME,2014,57(10):547-554. |
| APA | Wang, Baohua,Zhang, Yan,Wei, Peipei,Sun, Miao,Ma, Xiaofei,&Zhu, Xinyu.(2014).Identification of nuclear low-copy genes and their phylogenetic utility in rosids.GENOME,57(10),547-554. |
| MLA | Wang, Baohua,et al."Identification of nuclear low-copy genes and their phylogenetic utility in rosids".GENOME 57.10(2014):547-554. |
入库方式： OAI收割
来源：植物研究所
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