Revisiting the phylogeny of Ranunculeae: Implications for divergence time estimation and historical biogeography
文献类型：期刊论文
| 作者 | Wang, Wei; Li, Hong-Lei; Xiang, Xiao-Guo; Chen, Zhi-Duan
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| 刊名 | JOURNAL OF SYSTEMATICS AND EVOLUTION
 |
| 出版日期 | 2014 |
| 卷号 | 52期号:5页码:551-565 |
| 关键词 | biogeography combined analysis divergence-time estimates phylogeny Ranunculeae |
| ISSN号 | 1674-4918 |
| DOI | 10.1111/jse.12101 |
| 文献子类 | Article |
| 英文摘要 | Previous studies based on different molecular datasets have generated conflicting topologies for Ranunculeae. Here, we revisit the phylogeny of Ranunculeae by analyzing the individual matK/trnK, psbJ-petA, and internal transcribed spacer (ITS) data, the combined matK/trnK, psbJ-petA, and ITS dataset, and the combined rbcL, trnL-F, matK/trnK, psbJ-petA, and ITS dataset. Based on the tree-based comparisons, BLAST searches against NCBI of the sequences, and close examination of the alignment, we found that 10 psbJ-petA sequences previously used were questionable (erroneous or problematic) and responsible for previous conflicting topologies. After omitting these questionable sequences, we provide a new phylogeny for Ranunculeae, in which Beckwithia-Cyrtorhyncha, Kumlienia, and Peltocalathos were replaced. These new replacements are supported by corresponding morphological characters. Moreover, three previously proposed intercontinental disjunct distributions within Ranunculus were also refuted. In our framework, our divergence time and biogeographic analyses indicate that divergence time estimates and the ancestral areas reconstructed for 10 of the 15 nodes in the genus-level phylogeny were influenced by elimination of the questionable sequences. The most recent common ancestor of Ranunculeae was inferred to be present in Europe and North America during the late Eocene. Clades I and II began to diversify in Europe and North America, respectively, and subsequently migrated to other continents. This study shows that it is necessary to analyze individual chloroplast DNA region datasets separately to detect questionable sequences early in the study. The combined dataset including the questionable sequences resulted in an erroneous phylogenetic tree, and the use of this tree subsequently affected age estimates and biogeographic analyses. |
| 学科主题 | Plant Sciences |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1759-6831 |
| WOS关键词 | DISPERSAL-VICARIANCE ANALYSIS ; MOLECULAR PHYLOGENY ; DATA SETS ; EVOLUTIONARY ; NUCLEAR ; ORIGIN ; DIVERSIFICATION ; MENISPERMACEAE ; MITOCHONDRIAL ; SEQUENCES |
| WOS研究方向 | Plant Sciences |
| 语种 | 英语 |
| WOS记录号 | WOS:000342853300002 |
| 出版者 | WILEY |
| 资助机构 | National Natural Science Foundation of China [31270269, 30800059] ; Chinese Academy of Sciences' Visiting Professorship for Senior International Scientists [2011T1S24] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/27247]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.[Wang, Wei 2.Li, Hong-Lei 3.Xiang, Xiao-Guo 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang, Wei,Li, Hong-Lei,Xiang, Xiao-Guo,et al. Revisiting the phylogeny of Ranunculeae: Implications for divergence time estimation and historical biogeography[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2014,52(5):551-565. |
| APA | Wang, Wei,Li, Hong-Lei,Xiang, Xiao-Guo,&Chen, Zhi-Duan.(2014).Revisiting the phylogeny of Ranunculeae: Implications for divergence time estimation and historical biogeography.JOURNAL OF SYSTEMATICS AND EVOLUTION,52(5),551-565. |
| MLA | Wang, Wei,et al."Revisiting the phylogeny of Ranunculeae: Implications for divergence time estimation and historical biogeography".JOURNAL OF SYSTEMATICS AND EVOLUTION 52.5(2014):551-565. |
入库方式： OAI收割
来源：植物研究所
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