Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus
文献类型：期刊论文
| 作者 | Zou, Xin-Hui; Yang, Ziheng1,2; Doyle, Jeff J.; Ge, Song
|
| 刊名 | NEW PHYTOLOGIST
 |
| 出版日期 | 2013 |
| 卷号 | 198期号:4页码:1155-1164 |
| 关键词 | divergence time Oryza population size rapid diversification relaxed clock |
| ISSN号 | 0028-646X |
| DOI | 10.1111/nph.12230 |
| 文献子类 | Article |
| 英文摘要 | Despite substantial investigations into Oryza phylogeny and evolution, reliable estimates of the divergence times and ancestral effective population sizes of major lineages in Oryza are challenging. We sampled sequences of 106 single-copy nuclear genes from all six diploid genomes of Oryza to investigate the divergence times through extensive relaxed molecular clock analyses and estimated the ancestral effective population sizes using maximum likelihood and Bayesian methods. We estimated that Oryza originated in the middle Miocene (c. 1315 million years ago; Ma) and obtained an explicit time frame for two rapid diversifications in this genus. The first diversification involving the extant F-/G-genomes and possibly the extinct H-/J-/K-genomes occurred in the middle Miocene immediately after (within <1Myr) the origin of Oryza. The second giving rise to the A-/B-/C-genomes happened c. 56 Ma. We found that ancestral effective population sizes were much larger than those of extant species in Oryza. We suggest that the climate fluctuations during the period from the middle Miocene to Pliocene may have contributed to the two rapid diversifications of Oryza species. Such information helps better understand the evolutionary history of Oryza and provides further insights into the pattern and mechanism of diversification in plants in general. |
| 学科主题 | Plant Sciences |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1469-8137 |
| WOS关键词 | FOSSIL CALIBRATIONS ; MOLECULAR EVOLUTION ; BAYESIAN-ESTIMATION ; PRIMATE LINEAGE ; SPECIATION ; RADIATION ; GENOMES ; NUCLEAR ; HISTORY ; FOREST |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000318634400019 |
| 出版者 | WILEY |
| 资助机构 | National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)) |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/28174]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Zool, Ctr Computat & Evolutionary Biol, Beijing 100101, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 3.Doyle, Jeff J.] Cornell Univ, Dept Plant Biol, Ithaca, NY 14853 USA 4.UCL, Dept Genet Evolut & Environm, London WC1E 6BT, England |
| 推荐引用方式 GB/T 7714 | Zou, Xin-Hui,Yang, Ziheng,Doyle, Jeff J.,et al. Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus[J]. NEW PHYTOLOGIST,2013,198(4):1155-1164. |
| APA | Zou, Xin-Hui,Yang, Ziheng,Doyle, Jeff J.,&Ge, Song.(2013).Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus.NEW PHYTOLOGIST,198(4),1155-1164. |
| MLA | Zou, Xin-Hui,et al."Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus".NEW PHYTOLOGIST 198.4(2013):1155-1164. |
入库方式： OAI收割
来源：植物研究所
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