Transcriptome-wide Analysis Of Vernalization Reveals Conserved and Species-specific Mechanisms in Brachypodium
文献类型：期刊论文
| 作者 | Huan, Qing1; Mao, Zhiwei1; Zhang, Jingyu; Xu, Yunyuan; Chong, Kang |
| 刊名 | JOURNAL OF INTEGRATIVE PLANT BIOLOGY
 |
| 出版日期 | 2013 |
| 卷号 | 55期号:8页码:696-709 |
| 关键词 | Brachypodium comparative analysis RNA-Seq vernalization |
| ISSN号 | 1672-9072 |
| DOI | 10.1111/jipb.12050 |
| 文献子类 | Article |
| 英文摘要 | Several temperate cereals need vernalization to promote flowering. Little, however, is known about the vernalization-memory-related genes, and almost no comparative analysis has been performed. Here, RNA-Seq was used for transcriptome analysis in non-vernalized, vernalized and post-vernalized Brachypodium distachyon (L.) Beauv. seedlings. In total, the expression of 1,665 genes showed significant changes (fold change 4) in response to vernalization. Among them, 674 putative vernalization-memory-related genes with a constant response to vernalization were significantly enriched in transcriptional regulation and monooxygenase-mediated biological processes. Comparative analysis of vernalization-memory-related genes with barley demonstrated that the oxidative-stress response was the most conserved pathway between these two plant species. Moreover, Brachypodium preferred to regulate transcription and protein phosphorylation processes, while vernalization-memory-related genes, whose products are cytoplasmic membrane-bound-vesicle-located proteins, were preferred to be regulated in barley. Correlation analysis of the vernalization-related genes with barley revealed that the vernalization mechanism was conserved between these two plant species. In summary, vernalization, including its memory mechanism, is conserved between Brachypodium and barley, although several species-specific features also exist. The data reported here will provide primary resources for subsequent functional research in vernalization. |
| 学科主题 | Biochemistry & Molecular Biology ; Plant Sciences |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1744-7909 |
| WOS关键词 | PSEUDO-RESPONSE REGULATORS ; AGROBACTERIUM-MEDIATED TRANSFORMATION ; PLAY ESSENTIAL ROLES ; FLOWERING TIME ; HISTONE METHYLATION ; EXPRESSION ANALYSIS ; CIRCADIAN CLOCK ; RNA-SEQ ; ARABIDOPSIS ; WHEAT |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| WOS记录号 | WOS:000327083200002 |
| 出版者 | WILEY |
| 资助机构 | Main Direction Program of Knowledge Innovation of the Chinese Academy of Sciences(Chinese Academy of Sciences) ; National Natural Science Foundation of China(National Natural Science Foundation of China (NSFC)) |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/27937]  |
| 专题 | 中科院植物分子生理学重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, Key Lab Plant Mol Physiol, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| 推荐引用方式 GB/T 7714 | Huan, Qing,Mao, Zhiwei,Zhang, Jingyu,et al. Transcriptome-wide Analysis Of Vernalization Reveals Conserved and Species-specific Mechanisms in Brachypodium[J]. JOURNAL OF INTEGRATIVE PLANT BIOLOGY,2013,55(8):696-709. |
| APA | Huan, Qing,Mao, Zhiwei,Zhang, Jingyu,Xu, Yunyuan,&Chong, Kang.(2013).Transcriptome-wide Analysis Of Vernalization Reveals Conserved and Species-specific Mechanisms in Brachypodium.JOURNAL OF INTEGRATIVE PLANT BIOLOGY,55(8),696-709. |
| MLA | Huan, Qing,et al."Transcriptome-wide Analysis Of Vernalization Reveals Conserved and Species-specific Mechanisms in Brachypodium".JOURNAL OF INTEGRATIVE PLANT BIOLOGY 55.8(2013):696-709. |
入库方式： OAI收割
来源：植物研究所
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