Complete genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of Gilvimarinus sp. DA14 isolated from the South China Sea
文献类型:期刊论文
作者 | Yin, Qun-Jian1,4,5; Tang, Hong-Zhi1; Zhu, Fang-Chao1,4,5; Chen, Xu-Yang1,4,5; Cheng, De-Wei1,4,5; Tang, Li-Chang3; Qi, Xiao-Qing2; Li, Xue-Gong2 |
刊名 | MARINE GENOMICS |
出版日期 | 2022-10-01 |
卷号 | 65页码:5 |
ISSN号 | 1874-7787 |
关键词 | Gilvimarinus CAZymes PULs Genome sequence South China Sea |
DOI | 10.1016/j.margen.2022.100982 |
通讯作者 | Yin, Qun-Jian ; Li, Xue-Gong |
目次 | 否 |
英文摘要 | Gilvimarinus sp. DA14, a putative new species isolated from mangrove sediment in the South China Sea (Beihai, Guangxi province), is an aerobic and heterotrophic agar degrading bacterium. Here, we present the complete genome sequence of strain DA14, which comprises 3.96 Mb sequences with 53.39% GC content. In total, 3391 CDSs, 6 rRNA genes and 44 tRNA genes were obtained. Genomic analysis of strain DA14 revealed that 218 CAZymes classes were identified and they were organized in 371 CAZymes in PULs involved in polysaccharides degradation, transport and regulation. Further, we performed the genome comparison among Gilvimarinus strains and analysis the diversity of CAZymes and PULs. Meanwhile, ability of agar and alginate degradation in strain DA14 were analyzed. This study represents a thorough genomic characterization of CAZymes repertoire of Gilvimarinus, provides insight into diversity of polysaccharide degrading enzymes existing in Gilvimarinus sp. DA14 and their biotechnological applications. |
WOS关键词 | SP-NOV. ; DATABASE ; TOOL |
资助项目 | National Natural Science Foun-dation of China[42106127] ; Guangxi Natural Science Foun-dation[2020GXNSFBA297008] ; Guangxi Scientific Projects[AD20159003] ; Doctoral Scientific Research Foundation of the Fourth Institute of Oceanography[202006] |
WOS研究方向 | Genetics & Heredity ; Marine & Freshwater Biology |
语种 | 英语 |
出版者 | ELSEVIER |
WOS记录号 | WOS:000849574800001 |
资助机构 | National Natural Science Foun-dation of China ; Guangxi Natural Science Foun-dation ; Guangxi Scientific Projects ; Doctoral Scientific Research Foundation of the Fourth Institute of Oceanography |
源URL | [http://ir.idsse.ac.cn/handle/183446/9709] |
专题 | 深海科学研究部_深海生物学研究室_深海微生物细胞生物学研究组 |
通讯作者 | Yin, Qun-Jian; Li, Xue-Gong |
作者单位 | 1.Minist Nat Resources, Inst Oceanog 4, Beihai, Peoples R China 2.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Lab Deep Sea Microbial Cell Biol, Sanya, Peoples R China 3.Beihai Food & Drug Inspect & Testing Inst, Beihai, Peoples R China 4.Minist Nat Resources, Inst Oceanog 4, Key Lab Trop Marine Ecosyst & Bioresource, Beihai, Peoples R China 5.Minist Nat Resources, Inst Oceanog 4, Guangxi Key Lab Beibu Gulf Marine Resources Enviro, Beihai, Peoples R China |
推荐引用方式 GB/T 7714 | Yin, Qun-Jian,Tang, Hong-Zhi,Zhu, Fang-Chao,et al. Complete genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of Gilvimarinus sp. DA14 isolated from the South China Sea[J]. MARINE GENOMICS,2022,65:5. |
APA | Yin, Qun-Jian.,Tang, Hong-Zhi.,Zhu, Fang-Chao.,Chen, Xu-Yang.,Cheng, De-Wei.,...&Li, Xue-Gong.(2022).Complete genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of Gilvimarinus sp. DA14 isolated from the South China Sea.MARINE GENOMICS,65,5. |
MLA | Yin, Qun-Jian,et al."Complete genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of Gilvimarinus sp. DA14 isolated from the South China Sea".MARINE GENOMICS 65(2022):5. |
入库方式: OAI收割
来源:深海科学与工程研究所
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