itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files
文献类型：期刊论文
| 作者 | Zhou, Tong2,3,5; Xu, Kuidong2,3,5 ; Zhao, Feng2,3,5; Liu, Weiyue2,3; Li, Longzhao2,3; Hua, Zhongyi4; Zhou, Xin1
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| 刊名 | BIOINFORMATICS
 |
| 出版日期 | 2023-06-01 |
| 卷号 | 39期号:6页码:4 |
| ISSN号 | 1367-4803 |
| DOI | 10.1093/bioinformatics/btad339 |
| 通讯作者 | Xu, Kuidong(kxu@qdio.ac.cn) |
| 英文摘要 | iTOL is a powerful and comprehensive phylogenetic tree visualization engine. However, adjusting to new templates can be time-consuming, especially when many templates are available. We developed an R package namely itol.toolkit to help users generate all 23 types of annotation files in iTOL. This R package also provides an all-in-one data structure to store data and themes, accelerating the step from metadata to annotation files of iTOL visualizations through automatic workflows. |
| WOS关键词 | REPRODUCIBILITY |
| 资助项目 | National Natural Science Foundation of China[41930533] ; National Natural Science Foundation of China[41876171] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB42000000] ; Youth Innovation Promotion Association CAS[2022206] |
| WOS研究方向 | Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics |
| 语种 | 英语 |
| 出版者 | OXFORD UNIV PRESS |
| WOS记录号 | WOS:001004164400010 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/182454]  |
| 专题 | 海洋研究所_海洋生物分类与系统演化实验室 海洋研究所_实验海洋生物学重点实验室 |
| 通讯作者 | Xu, Kuidong |
| 作者单位 | 1.Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing 100101, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Lab Marine Organism Taxon & Phylogeny, Qingdao Key Lab Marine Biodivers & Conservat, Qingdao 266071, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100700, Peoples R China 4.China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, Beijing 100700, Peoples R China 5.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhou, Tong,Xu, Kuidong,Zhao, Feng,et al. itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files[J]. BIOINFORMATICS,2023,39(6):4. |
| APA | Zhou, Tong.,Xu, Kuidong.,Zhao, Feng.,Liu, Weiyue.,Li, Longzhao.,...&Zhou, Xin.(2023).itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files.BIOINFORMATICS,39(6),4. |
| MLA | Zhou, Tong,et al."itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files".BIOINFORMATICS 39.6(2023):4. |
入库方式： OAI收割
来源：海洋研究所
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