Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
文献类型：期刊论文
| 作者 | Song, Hao1,3,4; Li, Zhuoqing1,3; Yang, Meijie1,3,4; Shi, Pu1,3 ; Yu, Zhenglin2; Hu, Zhi1,3; Zhou, Cong1,3; Hu, Pengpeng1,3; Zhang, Tao1,3,4
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| 刊名 | SCIENTIFIC DATA
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| 出版日期 | 2023-08-16 |
| 卷号 | 10期号:1页码:10 |
| DOI | 10.1038/s41597-023-02459-7 |
| 通讯作者 | Zhang, Tao(tzhang@qdio.ac.cn) |
| 英文摘要 | The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome conformation capture scaffolding. The assembled genome has a size of 2.30 Gb, with a scaffold N50 length of 64.63 Mb, and is anchored to 35 chromosomes. It contains 29,649 protein-coding genes, 77.22% of which were functionally annotated. Given its high heterozygosity (1.41%) and large proportion of repeat sequences (57.72%), it is one of the most complex genome assemblies. This chromosome-level genome assembly of R. venosa is an important resource for understanding molluscan evolutionary adaption and provides a genetic basis for its biological invasion control. |
| WOS关键词 | PHYLOGENETIC ANALYSIS ; CHESAPEAKE BAY ; MURICIDAE ; VALENCIENNES ; GASTROPOD ; RNA ; PREDICTION ; ALIGNMENT ; REVEALS ; WHELK |
| 资助项目 | National Natural Science Foundation of China[32002409] ; National Natural Science Foundation of China[42206086] ; National Natural Science Foundation of China[31972814] ; National Natural Science Foundation of China[32002374] ; China Agriculture Research System of MOF and MARA ; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National for Marine Science and Technology[LMEESCTSP-2018] ; Young Elite Scientists Sponsorship Program by CAST[2021QNRC001] ; Youth Innovation Promotion Association by CAS |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| 出版者 | NATURE PORTFOLIO |
| WOS记录号 | WOS:001049218700003 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/182792]  |
| 专题 | 海洋研究所_海洋生态与环境科学重点实验室 |
| 通讯作者 | Zhang, Tao |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 2.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Res & Dev Ctr Efficient Utilizat Coastal Bioresour, Yantai 264003, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China |
| 推荐引用方式 GB/T 7714 | Song, Hao,Li, Zhuoqing,Yang, Meijie,et al. Chromosome-level genome assembly of the caenogastropod snail Rapana venosa[J]. SCIENTIFIC DATA,2023,10(1):10. |
| APA | Song, Hao.,Li, Zhuoqing.,Yang, Meijie.,Shi, Pu.,Yu, Zhenglin.,...&Zhang, Tao.(2023).Chromosome-level genome assembly of the caenogastropod snail Rapana venosa.SCIENTIFIC DATA,10(1),10. |
| MLA | Song, Hao,et al."Chromosome-level genome assembly of the caenogastropod snail Rapana venosa".SCIENTIFIC DATA 10.1(2023):10. |
入库方式： OAI收割
来源：海洋研究所
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