The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence
文献类型：期刊论文
| 作者 | Huang, Xiong; Wang, Wenling8; Gong, Ting9,10,11; Wickell, David; Kuo, Li-Yaung; Zhang, Xingtan8; Wen, Jialong6; Kim, Hoon4,5; Lu, Fachuang4,5; Zhao, Hansheng3 |
| 刊名 | NATURE PLANTS
 |
| 出版日期 | 2022 |
| 卷号 | 8期号:5页码:500+ |
| ISSN号 | 2055-026X |
| DOI | 10.1038/s41477-022-01146-6 |
| 文献子类 | Article |
| 英文摘要 | To date, little is known about the evolution of fern genomes, with only two small genomes published from the heterosporous Salviniales. Here we assembled the genome of Alsophila spinulosa, known as the flying spider-monkey tree fern, onto 69 pseudochromosomes. The remarkable preservation of synteny, despite resulting from an ancient whole-genome duplication over 100 million years ago, is unprecedented in plants and probably speaks to the uniqueness of tree ferns. Our detailed investigations into stem anatomy and lignin biosynthesis shed new light on the evolution of stem formation in tree ferns. We identified a phenolic compound, alsophilin, that is abundant in xylem, and we provided the molecular basis for its biosynthesis. Finally, analysis of demographic history revealed two genetic bottlenecks, resulting in rapid demographic declines of A. spinulosa. The A. spinulosa genome fills a crucial gap in the plant genomic landscape and helps elucidate many unique aspects of tree fern biology. The genome of the flying spider-monkey tree fern and investigations on stem formation and secondary metabolite biosynthesis promote our understanding of fern evolution and arborescence, facilitating the protection and utilization of this endangered species. |
| 学科主题 | Plant Sciences |
| 电子版国际标准刊号 | 2055-0278 |
| 出版地 | BERLIN |
| WOS关键词 | SYRINGYL LIGNIN BIOSYNTHESIS ; PHYLOGENETIC ANALYSIS ; TRANSCRIPTION FACTORS ; MOLECULAR EVOLUTION ; READ ALIGNMENT ; ORIGIN ; SELAGINELLA ; TOOL ; ASSOCIATION ; PLANTS |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| 出版者 | NATURE PORTFOLIO |
| WOS记录号 | WOS:000792577300003 |
| 资助机构 | Fundamental Research Funds of Chinese Academy of Forestry [CAFYBB2017ZY001] ; National Natural Science Foundation of China [32071787] ; Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University ; CAMS Innovation Fund for Medical Sciences [CIFMS2021-I2M-1-029] ; PUMC Disciplinary Development of Synthetic Biology [201920100801] ; DOE Great Lakes Bioenergy Research Center (DOE BER Office of Science) [DE-SC0018409] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/28857]  |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.Northeast Forestry Univ, State Key Lab Tree Genet & Breeding, Harbin, Peoples R China 2.State Forestry Adm, Inst Gene Bamboo & Rattan Resources, Int Ctr Bamboo & Rattan, Key Open Lab Sci & Technol Bamboo & Rattan, Beijing, Peoples R China 3.Univ Wisconsin, DOE Great Lakes Bioenergy Res Ctr, Wisconsin Energy Inst, Madison, WI USA 4.Univ Wisconsin, Dept Biochem, Wisconsin Energy Inst, 420 Henry Mall, Madison, WI 53705 USA 5.Beijing Forestry Univ, Beijing Key Lab Lignocellulos Chem, Beijing, Peoples R China 6.Natl Tsing Hua Univ, Inst Mol & Cellular Biol, Hsinchu, Taiwan 7.Cornell Univ, Plant Biol Sect, Ithaca, NY 14853 USA 8.Chinese Acad Forestry, State Key Lab Tree Genet & Breeding, Beijing, Peoples R China 9.Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Shenzhen Branch,Minist Agr & Rural Affairs, Guangdong Lab Lingnan Modern Agr,Genome Anal Lab, Shenzhen, Peoples R China 10.Chinese Acad Med Sci & Peking Union Med Coll, State Key Lab Bioact Subst & Funct Nat Med, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Huang, Xiong,Wang, Wenling,Gong, Ting,et al. The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence[J]. NATURE PLANTS,2022,8(5):500+. |
| APA | Huang, Xiong.,Wang, Wenling.,Gong, Ting.,Wickell, David.,Kuo, Li-Yaung.,...&Li, Quanzi.(2022).The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence.NATURE PLANTS,8(5),500+. |
| MLA | Huang, Xiong,et al."The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence".NATURE PLANTS 8.5(2022):500+. |
入库方式： OAI收割
来源：植物研究所
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