The Chromosome-Level Genome of Elaeagnus moorcroftii Wall., an Economically and Ecologically Important Tree Species in Drylands
文献类型:期刊论文
作者 | Fu, Xinxing; Wu, Jingjing1; Ma, Xiaohui1; Li, Kunpeng2,3; Zhang, Hui; Wu, Shengdan1; Sun, Kun |
刊名 | DIVERSITY-BASEL |
出版日期 | 2022 |
卷号 | 14期号:6 |
关键词 | Elaeagnus moorcroftii Wall PacBio's high-fidelity sequencing Hi-C-assisted assembly whole genome duplication xerophyte drylands |
DOI | 10.3390/d14060468 |
文献子类 | Article |
英文摘要 | Elaeagnus moorcroftii Wall. (Elaeagnaceae) is an important tree species naturally growing in arid Northwest China that has great economic and ecological values in drylands. In this study, we de novo assembled a chromosome-level genome for E. moorcroftii by using PacBio's high-fidelity (HiFi) sequencing and Hi-C-assisted assembly technology. The assembled genome size was 529.56 Mb, of which 94.56% was anchored to 14 pseudochromosomes with a contig N50 up to 28.21 Mb. In total, 29,243 protein-coding genes were annotated, and 98.5% of the Benchmarking Universal Single-Copy Orthologs (BUSCOs) were captured in the genome. Evolutionary genomic analysis showed that E. moorcroftii split with Elaeagnus mollis 9.38 million years ago (Ma), and contrasted evolutionary trajectories of gene family expansion and contraction were observed for these two closely related species. Furthermore, we identified two successive whole genome duplication (WGD) events occurred in the genome of E. moorcroftii, in addition to the ancient gamma hexaploidization event shared by core eudicots. Together, the chromosome-level genome assembly for E. moorcroftii decoded here provides valuable genomic information for the further genetic improvement and molecular breeding of this indigenous species in drylands. |
学科主题 | Biodiversity Conservation ; Ecology |
电子版国际标准刊号 | 1424-2818 |
出版地 | BASEL |
WOS关键词 | SEQUENCE ; ANNOTATION ; PROGRAM ; GENE ; TOOL |
WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
语种 | 英语 |
出版者 | MDPI |
WOS记录号 | WOS:000819049800001 |
资助机构 | Shenzhen Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden [SSTLAB-2022-01] ; 2022 Key Talent Project of Gansu Province ; Fundamental Research Funds for the Central Universities [lzujbky-2021-49] |
源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/28880] |
专题 | 系统与进化植物学国家重点实验室 |
作者单位 | 1.Northwest Normal Univ, Coll Life Sci, Lanzhou 730070, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 3.Lanzhou Univ, Coll Ecol, State Key Lab Grassland Agroecosyst, Lanzhou 730000, Peoples R China 4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
推荐引用方式 GB/T 7714 | Fu, Xinxing,Wu, Jingjing,Ma, Xiaohui,et al. The Chromosome-Level Genome of Elaeagnus moorcroftii Wall., an Economically and Ecologically Important Tree Species in Drylands[J]. DIVERSITY-BASEL,2022,14(6). |
APA | Fu, Xinxing.,Wu, Jingjing.,Ma, Xiaohui.,Li, Kunpeng.,Zhang, Hui.,...&Sun, Kun.(2022).The Chromosome-Level Genome of Elaeagnus moorcroftii Wall., an Economically and Ecologically Important Tree Species in Drylands.DIVERSITY-BASEL,14(6). |
MLA | Fu, Xinxing,et al."The Chromosome-Level Genome of Elaeagnus moorcroftii Wall., an Economically and Ecologically Important Tree Species in Drylands".DIVERSITY-BASEL 14.6(2022). |
入库方式: OAI收割
来源:植物研究所
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