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Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes

文献类型：期刊论文

作者Chen, Sisi2,3,4; Wang, Ting2,6; Shu, Jiangping2,4,5; Xiang, Qiaoping3; Yang, Tuo2; Zhang, Xianchun3; Yan, Yuehong2
刊名GENES
出版日期2022
卷号13期号:7
关键词lycophytes plastid genome comparative genomics clubmoss plastomic diversity
DOI10.3390/genes13071280
文献子类Article
英文摘要Although extant lycophytes represent the most ancient surviving lineage of early vascular plants, their plastomic diversity has long been neglected. The ancient evolutionary history and distinct genetic diversity patterns of the three lycophyte families, each with its own characteristics, provide an ideal opportunity to investigate the interfamilial relationships of lycophytes and their associated patterns of evolution. To compensate for the lack of data on Lycopodiaceae, we sequenced and assembled 14 new plastid genomes (plastomes). Combined with other lycophyte plastomes available online, we reconstructed the phylogenetic relationships of the extant lycophytes based on 93 plastomes. We analyzed, traced, and compared the plastomic diversity and divergence of the three lycophyte families (Isoetaceae, Lycopodiaceae, and Selaginellaceae) in terms of plastomic diversity by comparing their plastome sizes, GC contents, substitution rates, structural rearrangements, divergence times, ancestral states, RNA editings, and gene losses. Comparative analysis of plastid phylogenomics and plastomic diversity of three lycophyte families will set a foundation for further studies in biology and evolution in lycophytes and therefore in vascular plants.
学科主题Genetics & Heredity
出版地BASEL
电子版国际标准刊号2073-4425
WOS关键词COMPLETE CHLOROPLAST GENOME ; EARLY EVOLUTION ; SEQUENCE ; EXTREME ; ORIGIN ; PHYLOGENETICS ; HUPERZIA ; CUPRESSOPHYTES ; TRANSCRIPTOME ; RECOMBINATION
WOS研究方向Science Citation Index Expanded (SCI-EXPANDED)
语种英语
WOS记录号WOS:000833246700001
出版者MDPI
资助机构China National Orchid Conservation Center ; Orchid Conservation and Research Center of Shenzhen (CNOCC) ; State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences (LSEB, IBCAS) ; University of Chinese Academy of Sciences (UCAS) ; Strategic Priority Research Program of the Chinese Academy of Sciences [XDA19050404] ; National Natural Science Foundation of China [31872651] ; Basic and Applied Basic Research Foundation of Guangdong Province [2021A1515010920]
源URL[http://ir.ibcas.ac.cn/handle/2S10CLM1/28913]  
专题植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文
作者单位1.Chinese Acad Sci, Key Lab Plant Resources Conservat & Sustainable U, South China Bot Garden, Guangzhou 510650, Peoples R China
2.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen 518114, Peoples R China
3.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China
4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China
5.Southwest Forestry Univ, Coll Biodivers Conservat, Kunming 650224, Yunnan, Peoples R China
6.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式
GB/T 7714		 Chen, Sisi,Wang, Ting,Shu, Jiangping,et al. Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes[J]. GENES,2022,13(7).
APA Chen, Sisi.,Wang, Ting.,Shu, Jiangping.,Xiang, Qiaoping.,Yang, Tuo.,...&Yan, Yuehong.(2022).Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes.GENES,13(7).
MLA Chen, Sisi,et al."Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes".GENES 13.7(2022).

入库方式： OAI收割

来源：植物研究所

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