Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil
文献类型：期刊论文
| 作者 | Shu, Jiang-Ping; Wang, Hao5; Shen, Hui5; Wang, Rui-Jiang; Fu, Qiang; Wang, Yong-Dong; Jiao, Yuan-Nian; Yan, Yue-Hong |
| 刊名 | PLANTS-BASEL
 |
| 出版日期 | 2022 |
| 卷号 | 11期号:12 |
| 关键词 | ancient polyploidization ancient radiation reticulate evolution mass extinction ferns phylogeny 1-to-1 orthologous genes |
| DOI | 10.3390/plants11121529 |
| 文献子类 | Article |
| 英文摘要 | Phylogenetic conflicts limit our understanding of the evolution of terrestrial life under multiple whole genome duplication events, and the phylogeny of early terrestrial plants remains full of controversy. Although much incongruence has been solved with so-called robust topology based on single or lower copy genes, the evolutionary mechanisms behind phylogenetic conflicts such as polyploidization remain poorly understood. Here, through decreasing the effects of polyploidization and increasing the samples of species, which represent all four orders and eight families that comprise early leptosporangiate ferns, we have reconstructed a robust phylogenetic tree and network with 1125 1-to-1 orthologs based on both coalescent and concatenation methods. Our data consistently suggest that Matoniales, as a monophyletic lineage including Matoniaceae and Dipteridaceae, should be redefined as an ordinal rank. Furthermore, we have identified and located at least 11 whole-genome duplication events within the evolutionary history of four leptosporangiates lineages, and associated polyploidization with higher speciation rates and mass extinction events. We hypothesize that paleopolyploidization may have enabled leptosporangiate ferns to survive during mass extinction events at the end Permian period and then flourish throughout the Mesozoic era, which is supported by extensive fossil records. Our results highlight how ancient polyploidy can result in rapid species radiation, thus causing phylogenetic conflicts yet allowing plants to survive and thrive during mass extinction events. |
| 学科主题 | Plant Sciences |
| 电子版国际标准刊号 | 2223-7747 |
| 出版地 | BASEL |
| WOS关键词 | WHOLE GENOME DUPLICATIONS ; IN-SITU SPORES ; FERNS ; EVOLUTION ; DIVERSIFICATION ; POLYPLOIDY ; TREE ; CLASSIFICATION ; CONSEQUENCES ; DIVERSITY |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| 语种 | 英语 |
| 出版者 | MDPI |
| WOS记录号 | WOS:000815942100001 |
| 资助机构 | Strategic Priority Research Program of the Chinese Academy of Sciences [XDA19050404] ; National Natural Science Foundation of China [31800174, 32170216] ; Shanghai Landscaping and City Appearance Administrative Bureau of China [G182410] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/28778]  |
| 专题 | 中科院北方资源植物重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Ctr Excellence Life & Paleoenvironm, Nanjing 210008, Peoples R China 2.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen 518114, Peoples R China 3.Natl Orchid Conservat Ctr China, Key Lab Natl Forestry & Grassland Adm Orchid Cons, Shenzhen 518114, Peoples R China 4.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 5.Chinese Acad Sci, South China Bot Garden, Key Lab Plant Resources Conservat & Sustainable U, Guangzhou 510650, Peoples R China 6.Chinese Acad Sci, Shanghai Chenshan Bot Garden, Shanghai Chenshan Plant Sci Res Ctr, Shanghai 201602, Peoples R China 7.Chinese Acad Sci, Nanjing Inst Geol & Palaeontol, State Key Lab Palaeobiol & Stratig, Nanjing 210008, Peoples R China 8.Chinese Acad Sci, Inst Bot, Beijing 100039, Peoples R China |
| 推荐引用方式 GB/T 7714 | Shu, Jiang-Ping,Wang, Hao,Shen, Hui,et al. Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil[J]. PLANTS-BASEL,2022,11(12). |
| APA | Shu, Jiang-Ping.,Wang, Hao.,Shen, Hui.,Wang, Rui-Jiang.,Fu, Qiang.,...&Yan, Yue-Hong.(2022).Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil.PLANTS-BASEL,11(12). |
| MLA | Shu, Jiang-Ping,et al."Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil".PLANTS-BASEL 11.12(2022). |
入库方式： OAI收割
来源：植物研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。