Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub
文献类型：期刊论文
| 作者 | Zhao,Shi-Wei; Guo,Jing-Fang; Kong,Lei; Nie,Shuai; Yan,Xue-Mei; Shi,Tian-Le; Tian,Xue-Chan; Ma,Hai-Yao; Bao,Yu-Tao; Li,Zhi-Chao |
| 刊名 | SCIENTIFIC DATA
 |
| 出版日期 | 2023 |
| 卷号 | 10期号:1页码:259 |
| ISSN号 | 2052-4463 |
| 关键词 | NUCLEOTIDE-SEQUENCES ESSENTIAL OIL ROOT-NODULES ANNOTATION TRANSCRIPTOME PATTERNS PROVIDES PROGRAM SYSTEM GROWTH |
| DOI | 10.1038/s41597-023-02171-6 |
| 英文摘要 | Coriaria nepalensis Wall. (Coriariaceae) is a nitrogen-fixing shrub which forms root nodules with the actinomycete Frankia. Oils and extracts of C. nepalensis have been reported to be bacteriostatic and insecticidal, and C. nepalensis bark provides a valuable tannin resource. Here, by combining PacBio HiFi sequencing and Hi-C scaffolding techniques, we generated a haplotype-resolved chromosome-scale genome assembly for C. nepalensis. This genome assembly is approximately 620 Mb in size with a contig N50 of 11 Mb, with 99.9% of the total assembled sequences anchored to 40 pseudochromosomes. We predicted 60,862 protein-coding genes of which 99.5% were annotated from databases. We further identified 939 tRNAs, 7,297 rRNAs, and 982 ncRNAs. The chromosome-scale genome of C. nepalensis is expected to be a significant resource for understanding the genetic basis of root nodulation with Frankia, toxicity, and tannin biosynthesis. |
| 学科主题 | Science & Technology - Other Topics |
| WOS记录号 | WOS:000983082000002 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/74872]  |
| 专题 | 中国科学院昆明植物研究所 |
| 推荐引用方式 GB/T 7714 | Zhao,Shi-Wei,Guo,Jing-Fang,Kong,Lei,et al. Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub[J]. SCIENTIFIC DATA,2023,10(1):259. |
| APA | Zhao,Shi-Wei.,Guo,Jing-Fang.,Kong,Lei.,Nie,Shuai.,Yan,Xue-Mei.,...&Mao,Jian-Feng.(2023).Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub.SCIENTIFIC DATA,10(1),259. |
| MLA | Zhao,Shi-Wei,et al."Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub".SCIENTIFIC DATA 10.1(2023):259. |
入库方式： OAI收割
来源：昆明植物研究所
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