Chromosome-level genome assembly of the silver pomfret Pampus argenteus
文献类型：期刊论文
| 作者 | Wei, Jiehong3,4 ; Xiao, Yongshuang4; Liu, Jing4; Herrera-Ulloa, Angel2; Loh, Kar-Hoe1; Xu, Kuidong4
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| 刊名 | SCIENTIFIC DATA
 |
| 出版日期 | 2024-02-23 |
| 卷号 | 11期号:1页码:11 |
| DOI | 10.1038/s41597-024-03070-0 |
| 通讯作者 | Liu, Jing(jliu@qdio.ac.cn) ; Xu, Kuidong(kxu@qdio.ac.cn) |
| 英文摘要 | Pampus argenteus (Euphrasen, 1788) is one of the major fishery species in coastal China. Pampus argenteus has a highly specialized morphology, and its declining fishery resources have encouraged massive research efforts on its aquacultural biology. In this study, we reported the first high-quality chromosome-level genome of P. argenteus obtained by integrating Illumina, PacBio HiFi, and Hi-C sequencing techniques. The final size of the genome was 518.06 Mb, with contig and scaffold N50 values of 20.47 and 22.86 Mb, respectively. The sequences were anchored and oriented onto 24 pseudochromosomes based on Hi-C data corresponding to the 24-chromatid karyotype of P. argenteus. A colinear relationship was observed between the P. argenteus genome and that of a closely related species (Scomber japonicus). A total of 24,696 protein-coding genes were identified from the genome, 98.9% of which were complete BUSCOs. This report represents the first case of high-quality chromosome-level genome assembly for P. argenteus and can provide valuable information for future evolutionary, conservation, and aquacultural research. |
| WOS关键词 | SEQUENCE ; PREDICTION ; ALIGNMENT ; COVERAGE ; PROVIDES ; SYSTEM ; FINDER ; GENE |
| 资助项目 | National Natural Science Foundation of China (National Science Foundation of China)[31872195] ; National Natural Science Foundation of China (National Science Foundation of China)[32270472] ; National Natural Science Foundation of China[XDB42000000] ; Strategic Priority Research Program of the Chinese Academy of Sciences |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:001177046200001 |
| 出版者 | NATURE PORTFOLIO |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/184995]  |
| 专题 | 中国科学院海洋研究所 |
| 通讯作者 | Liu, Jing; Xu, Kuidong |
| 作者单位 | 1.Univ Malaya, Inst Ocean & Earth Sci, Kuala Lumpur, Malaysia 2.Univ Nacl, Escuela Ciencias Biol, San Jose, Costa Rica 3.Univ Chinese Acad Sci, Beijing, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wei, Jiehong,Xiao, Yongshuang,Liu, Jing,et al. Chromosome-level genome assembly of the silver pomfret Pampus argenteus[J]. SCIENTIFIC DATA,2024,11(1):11. |
| APA | Wei, Jiehong,Xiao, Yongshuang,Liu, Jing,Herrera-Ulloa, Angel,Loh, Kar-Hoe,&Xu, Kuidong.(2024).Chromosome-level genome assembly of the silver pomfret Pampus argenteus.SCIENTIFIC DATA,11(1),11. |
| MLA | Wei, Jiehong,et al."Chromosome-level genome assembly of the silver pomfret Pampus argenteus".SCIENTIFIC DATA 11.1(2024):11. |
入库方式： OAI收割
来源：海洋研究所
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