An ancient whole-genome duplication in barnacles contributes to their diversification and intertidal sessile life adaptation
文献类型：期刊论文
| 作者 | Yuan, Jianbo2,3,4; Zhang, Xiaojun2,3,4; Zhang, Xiaoxi2,3 ; Sun, Yamin5; Liu, Chengzhang2,3,4; Li, Shihao2,3,4; Yu, Yang2,3,4; Zhang, Chengsong2,3,4; Jin, Songjun2,3,4; Wang, Min1,6
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| 刊名 | JOURNAL OF ADVANCED RESEARCH
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| 出版日期 | 2024-08-01 |
| 卷号 | 62页码:91-103 |
| 关键词 | Barnacle genome Whole-genome duplication Comparative genomics Intertidal adaptation Transcriptome analysis |
| ISSN号 | 2090-1232 |
| DOI | 10.1016/j.jare.2023.09.015 |
| 通讯作者 | Wang, Min(wangm@nankai.edu.cn) ; Xiang, Jianhai(jhxiang@qdio.ac.cn) ; Li, Fuhua(fhli@qdio.ac.cn) |
| 英文摘要 | Introduction: Whole-genome duplication (WGD) is one of the most sudden and dramatic events rarely reported in invertebrates, but its occurrence can lead to physiological, morphological, and behavioral diversification. WGD has also never been reported in barnacles, which is one of the most unique groups of crustaceans with extremely speciallized morphology (calcareous shells) and habits (intertidal sessile lifestyle). Objectives: To investigate whether WGD has occurred in barnacles and examine its potential role in driving the adaptive evolution and diversification of barnacles. Methods: Based on a newly sequenced and assembled chromosome-level barnacle genome, a novel WGD event has been identified in barnacles through a comprehensive analysis of interchromosomal synteny, the Hox gene cluster, and synonymous substitution distribution. Results: We provide ample evidences for WGD in the barnacle genomes. Comparative genomic analysis indicates that this WGD event predates the divergence of Thoracicalcarea, occurring more than 247 million years ago. The retained ohnologs from the WGD are primarily enriched in various pathways related to environmental information processing, shedding light on the adaptive evolution and diversification of intertidal sessile lifestyle. In addition, transcriptomic analyses show that most of these ohnologs were differentially expressed following the ebb of tide. And the cytochrome P450 ohnologs with differential expression patterns are subject to subfunctionalization and/or neofunctionalization for intertidal adaptation. Besides WGD, parallel evolution underlying intertidal adaptation has also occurred in barnacles. Conclusion: This study revealed an ancient WGD event in the barnacle genomes, which is potentially associated with the origin and diversification of thoracican barnacles, and may have contributed to the adaptive evolution of their intertidal sessile lifestyle. (c) 2024 The Authors. Published by Elsevier B.V. on behalf of Cairo University. This is an open access article |
| WOS关键词 | CYTOCHROME-P450 ENZYMES ; PARALLEL EVOLUTION ; GENE CONTENT ; HOX GENES ; INSIGHTS ; PROVIDES ; ORIGINS ; CONSEQUENCES ; MECHANISMS ; CYCLES |
| 资助项目 | Science & Technology Innovation Project of Laoshan Laboratory[LSKJ202203001] ; Natural Science Foundation of China[42176105] ; Natural Science Foundation of China[31830100] ; Natural Science Foundation of China[41876167] ; National Key Research & Development Program of China[2018YFD0900103] ; China Agriculture Research system-48[CARS-48] ; Taishan Scholars Program ; Oceanographic Data Center, IOCAS |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:001274150400001 |
| 出版者 | ELSEVIER |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/186096]  |
| 专题 | 海洋研究所_实验海洋生物学重点实验室 |
| 通讯作者 | Wang, Min; Xiang, Jianhai; Li, Fuhua |
| 作者单位 | 1.Nankai Univ, Key Lab Mol Microbiol & Technol, Minist Educ, Tianjin 300071, Peoples R China 2.Chinese Acad Sci, Qingdao 266071, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, Shandong Prov Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 4.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China 5.Res Ctr Funct Genom & Biochip, Tianjin 300457, Peoples R China 6.Nankai Univ, TEDA Inst Biol Sci & Biotechnol, Tianjin 300457, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yuan, Jianbo,Zhang, Xiaojun,Zhang, Xiaoxi,et al. An ancient whole-genome duplication in barnacles contributes to their diversification and intertidal sessile life adaptation[J]. JOURNAL OF ADVANCED RESEARCH,2024,62:91-103. |
| APA | Yuan, Jianbo.,Zhang, Xiaojun.,Zhang, Xiaoxi.,Sun, Yamin.,Liu, Chengzhang.,...&Li, Fuhua.(2024).An ancient whole-genome duplication in barnacles contributes to their diversification and intertidal sessile life adaptation.JOURNAL OF ADVANCED RESEARCH,62,91-103. |
| MLA | Yuan, Jianbo,et al."An ancient whole-genome duplication in barnacles contributes to their diversification and intertidal sessile life adaptation".JOURNAL OF ADVANCED RESEARCH 62(2024):91-103. |
入库方式： OAI收割
来源：海洋研究所
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