Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
文献类型：期刊论文
| 作者 | Liu, Rui1,2,3,5; Cai, Ruining1,2,3,5; Wang, Minxiao4,5; Zhang, Jing1,2,3,5 ; Zhang, Huan4,5; Li, Chaolun4,5; Sun, Chaomin1,2,3,4,5
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| 刊名 | ENVIRONMENTAL MICROBIOME
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| 出版日期 | 2024-06-22 |
| 卷号 | 19期号:1页码:14 |
| 关键词 | Heimdallarchaeia Cold seep Hydrothermal vent Metabolism pathway Light-sensing Microoxic lifestyle |
| DOI | 10.1186/s40793-024-00585-2 |
| 通讯作者 | Li, Chaolun(lcl@qdio.ac.cn) ; Sun, Chaomin(sunchaomin@qdio.ac.cn) |
| 英文摘要 | Heimdallarchaeia is a class of the Asgardarchaeota, are the most probable candidates for the archaeal protoeukaryote ancestor that have been identified to date. However, little is known about their life habits regardless of their ubiquitous distribution in diverse habitats, which is especially true for Heimdallarchaeia from deep-sea environments. In this study, we obtained 13 metagenome-assembled genomes (MAGs) of Heimdallarchaeia from the deep-sea cold seep and hydrothermal vent. These MAGs belonged to orders o_Heimdallarchaeales and o_JABLTI01, and most of them (9 MAGs) come from the family f_Heimdallarchaeaceae according to genome taxonomy database (GTDB). These are enriched for common eukaryote-specific signatures. Our results show that these Heimdallarchaeia have the metabolic potential to reduce sulfate (assimilatory) and nitrate (dissimilatory) to sulfide and ammonia, respectively, suggesting a previously unappreciated role in biogeochemical cycling. Furthermore, we find that they could perform both TCA and rTCA pathways coupled with pyruvate metabolism for energy conservation, fix CO2 and generate organic compounds through an atypical Wood-Ljungdahl pathway. In addition, many genes closely associated with bacteriochlorophyll and carotenoid biosynthesis, and oxygen-dependent metabolic pathways are identified in these Heimdallarchaeia MAGs, suggesting a potential light-utilization by pigments and microoxic lifestyle. Taken together, our results indicate that Heimdallarchaeia possess a mixotrophic lifestyle, which may give them more flexibility to adapt to the harsh deep-sea conditions. |
| WOS关键词 | ARCHAEA ; METABOLISM ; METHANE ; BACTERIA ; ENZYMES ; GENES ; LIGHT ; BACTERIOCHLOROPHYLL ; BIOSYNTHESIS ; DIVERSITY |
| 资助项目 | Science and Technology Innovation Project of Laoshan Laboratory ; Major Research Plan of the National Natural Science Foundation[92351301] ; NSFC Innovative Group Grant[42221005] ; Shandong Provincial Natural Science Foundation[ZR2021ZD28] ; Key Collaborative Research Program of the Alliance of International Science Organizations ; Taishan Scholars Program - Open Research Project of National Major Science & Technology Infrastructure ; [2022QNLM030004-3] ; [LSKJ202203103] |
| WOS研究方向 | Genetics & Heredity ; Microbiology |
| 语种 | 英语 |
| WOS记录号 | WOS:001253103600001 |
| 出版者 | BMC |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/186530]  |
| 专题 | 海洋研究所_实验海洋生物学重点实验室 |
| 通讯作者 | Li, Chaolun; Sun, Chaomin |
| 作者单位 | 1.Qingdao Marine Sci & Technol Ctr, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, CAS, Qingdao, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao, Peoples R China 4.Chinese Acad Sci, Ctr Deep Sea Res, Inst Oceanol, Qingdao, Peoples R China 5.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China |
| 推荐引用方式 GB/T 7714 | Liu, Rui,Cai, Ruining,Wang, Minxiao,et al. Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent[J]. ENVIRONMENTAL MICROBIOME,2024,19(1):14. |
| APA | Liu, Rui.,Cai, Ruining.,Wang, Minxiao.,Zhang, Jing.,Zhang, Huan.,...&Sun, Chaomin.(2024).Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent.ENVIRONMENTAL MICROBIOME,19(1),14. |
| MLA | Liu, Rui,et al."Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent".ENVIRONMENTAL MICROBIOME 19.1(2024):14. |
入库方式： OAI收割
来源：海洋研究所
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