Phylogenomics and the flowering plant tree of life
文献类型：期刊论文
| 作者 | Guo, Cen; Luo, Yang; Gao, Lian-Ming ; Yi, Ting-Shuang; Li, Hong-Tao; Yang, Jun-Bo; Li, De-Zhu
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| 刊名 | JOURNAL OF INTEGRATIVE PLANT BIOLOGY
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| 出版日期 | 2022 |
| 关键词 | angiosperms hybridization incomplete lineage sorting orthology inference phylogenetic conflicts reduced representation sequencing whole-genome sequencing whole-genome duplication SYSTEMATIC-ERRORS RNA-SEQ SEQUENCE CAPTURE SEED PLANTS DATA SETS GENOME EVOLUTION RADSEQ TOOL CLASSIFICATION |
| DOI | 10.1111/jipb.13415 |
| 英文摘要 | The advances accelerated by next-generation sequencing and long-read sequencing technologies continue to provide an impetus for plant phylogenetic study. In the past decade, a large number of phylogenetic studies adopting hundreds to thousands of genes across a wealth of clades have emerged and ushered plant phylogenetics and evolution into a new era. In the meantime, a roadmap for researchers when making decisions across different approaches for their phylogenomic research design is imminent. This review focuses on the utility of genomic data (from organelle genomes, to both reduced representation sequencing and whole-genome sequencing) in phylogenetic and evolutionary investigations, describes the baseline methodology of experimental and analytical procedures, and summarizes recent progress in flowering plant phylogenomics at the ordinal, familial, tribal, and lower levels. We also discuss the challenges, such as the adverse impact on orthology inference and phylogenetic reconstruction raised from systematic errors, and underlying biological factors, such as whole-genome duplication, hybridization/introgression, and incomplete lineage sorting, together suggesting that a bifurcating tree may not be the best model for the tree of life. Finally, we discuss promising avenues for future plant phylogenomic studies. |
| WOS记录号 | WOS:000905858600001 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/75661]  |
| 专题 | 中国科学院昆明植物研究所 |
| 推荐引用方式 GB/T 7714 | Guo, Cen,Luo, Yang,Gao, Lian-Ming,et al. Phylogenomics and the flowering plant tree of life[J]. JOURNAL OF INTEGRATIVE PLANT BIOLOGY,2022. |
| APA | Guo, Cen.,Luo, Yang.,Gao, Lian-Ming.,Yi, Ting-Shuang.,Li, Hong-Tao.,...&Li, De-Zhu.(2022).Phylogenomics and the flowering plant tree of life.JOURNAL OF INTEGRATIVE PLANT BIOLOGY. |
| MLA | Guo, Cen,et al."Phylogenomics and the flowering plant tree of life".JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2022). |
入库方式： OAI收割
来源：昆明植物研究所
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