Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches
文献类型：期刊论文
| 作者 | Zhang, Yue1,2; Jing, Hongmei1,2
|
| 刊名 | SCIENTIFIC DATA
 |
| 出版日期 | 2024-08-15 |
| 卷号 | 11期号:1页码:6 |
| DOI | 10.1038/s41597-024-03762-7 |
| 英文摘要 | Microbes in the sediments across a series of seamounts along the island arc of the Yap and Mariana trenches were investigated by metagenome. In this study, we reconstructed 107 metagenome-assembled genomes (MAGs), including 100 bacteria and 7 archaea. All the MAGs exhibited >75% completeness and <10% contamination, with 26 MAGs being classified as 'nearly complete' (completeness >90%), while 50 falling within 80-90% range and 31 between 75-80% complete. Phylogenomic analysis revealed that 86% (n = 92) of these MAGs represented new taxa at different taxonomical levels. The species composition of these MAGs was most consistent with the previous reports, with the most abundant phyla being Proteobacteria (n = 39), Methylomirabilota (n = 27), and Nitrospirota (n = 7). These draft genomes provided novel data on species diversity and function in the seamount microbial community, which will provide reference data for extensive comparative genomic studies across crucial phylogenetic groups worldwide. |
| WOS关键词 | BIODIVERSITY ; QUALITY ; TOOL |
| 资助项目 | This work was supported by the National Key RD Program of China (2022YFC2805505; 2022YFC2805400), the Hainan Provincial Natural Science Foundation of China (424QN341), the International Partnership Program of Chinese Academy of Sciences for Big Science (1[2022YFC2805505] ; This work was supported by the National Key RD Program of China (2022YFC2805505; 2022YFC2805400), the Hainan Provincial Natural Science Foundation of China (424QN341), the International Partnership Program of Chinese Academy of Sciences for Big Science (1[2022YFC2805400] ; This work was supported by the National Key RD Program of China (2022YFC2805505; 2022YFC2805400), the Hainan Provincial Natural Science Foundation of China (424QN341), the International Partnership Program of Chinese Academy of Sciences for Big Science (1[2022YFC2805304] ; National Key R&D Program of China[KJRC2023C37] ; Innovational Fund for Scientific and Technological Personnel of Hainan Province[183446KYSB20210002] ; International Partnership Program of Chinese Academy of Sciences for Big Science |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:001292564500005 |
| 出版者 | NATURE PORTFOLIO |
| 资助机构 | This work was supported by the National Key RD Program of China (2022YFC2805505; 2022YFC2805400), the Hainan Provincial Natural Science Foundation of China (424QN341), the International Partnership Program of Chinese Academy of Sciences for Big Science (1 ; National Key R&D Program of China ; Innovational Fund for Scientific and Technological Personnel of Hainan Province ; International Partnership Program of Chinese Academy of Sciences for Big Science |
| 源URL | [http://ir.idsse.ac.cn/handle/183446/11453]  |
| 专题 | 深海科学研究部_深海生物学研究室_海洋微生物分子生态学研究组 |
| 通讯作者 | Jing, Hongmei |
| 作者单位 | 1.Chinese Acad Sci, HKUST CAS Sanya Joint Lab Marine Sci Res, Sanya, Peoples R China 2.Chinese Acad Sciences, Inst Deep Sea Sci & Engn, Sanya, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhang, Yue,Jing, Hongmei. Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches[J]. SCIENTIFIC DATA,2024,11(1):6. |
| APA | Zhang, Yue,&Jing, Hongmei.(2024).Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches.SCIENTIFIC DATA,11(1),6. |
| MLA | Zhang, Yue,et al."Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches".SCIENTIFIC DATA 11.1(2024):6. |
入库方式： OAI收割
来源：深海科学与工程研究所
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