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Identification and expression analysis of Sox family genes in echinoderms

文献类型：期刊论文

作者Li, Xiaojing2; Cao, Tiangui3; Liu, Hui3; Fu, Longhai2; Wang, Quanchao1,3
刊名BMC GENOMICS
出版日期2024-07-01
卷号25期号:1页码:11
关键词Echinoderm Sox Identification Phylogeny Expression
ISSN号1471-2164
DOI10.1186/s12864-024-10547-0
通讯作者Wang, Quanchao(qcwang@yic.ac.cn)
英文摘要The Sox gene family, a collection of transcription factors widely distributed throughout the animal kingdom, plays a crucial role in numerous developmental processes. Echinoderms occupy a pivotal position in many research fields, such as neuroscience, sex determination and differentiation, and embryonic development. However, to date, no comprehensive study has been conducted to characterize and analyze Sox genes in echinoderms. In the present study, the evolution and expression of Sox family genes across 11 echinoderms were analyzed using bioinformatics methods. The results revealed a total of 70 Sox genes, with counts ranging from 5 to 8 across different echinoderms. Phylogenetic analysis revealed that the identified Sox genes could be categorized into seven distinct classes: the SoxB1 class, SoxB2 class, SoxC class, SoxD class, SoxE class, SoxF class and SoxH class. Notably, the SoxB1, SoxB2, and SoxF genes were ubiquitously present in all the echinoderms studied, which suggests that these genes may be conserved in echinoderms. The spatiotemporal expression patterns observed for Sox genes in the three echinoderms indicated that various Sox members perform distinct functional roles. Notably, SoxB1 is likely involved in echinoderm ovary development, while SoxH may play a crucial role in testis development in starfish and sea cucumber. In general, the present investigation provides a molecular foundation for exploring the Sox gene in echinoderms, providing a valuable resource for future phylogenetic and genomic studies.
WOS关键词GENOME-WIDE ANALYSIS ; EVOLUTION ; SEQUENCE ; PATTERN ; EMBRYOS ; MOUSE
WOS研究方向Biotechnology & Applied Microbiology ; Genetics & Heredity
语种英语
WOS记录号WOS:001263636800004
资助机构High-Performance Computing Platform of Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences
源URL[http://ir.yic.ac.cn/handle/133337/35888]  
专题海岸带生物学与生物资源利用重点实验室
海岸带生物资源高效利用研究与发展中心
通讯作者Wang, Quanchao
作者单位1.Minist Nat Resources, Key Lab Ecol Warning Protect & Restorat Bohai Sea, Qingdao 266061, Peoples R China
2.Yantai Vocat Coll, Yantai 264003, Peoples R China
3.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China
推荐引用方式
GB/T 7714		 Li, Xiaojing,Cao, Tiangui,Liu, Hui,et al. Identification and expression analysis of Sox family genes in echinoderms[J]. BMC GENOMICS,2024,25(1):11.
APA Li, Xiaojing,Cao, Tiangui,Liu, Hui,Fu, Longhai,&Wang, Quanchao.(2024).Identification and expression analysis of Sox family genes in echinoderms.BMC GENOMICS,25(1),11.
MLA Li, Xiaojing,et al."Identification and expression analysis of Sox family genes in echinoderms".BMC GENOMICS 25.1(2024):11.

入库方式： OAI收割

来源：烟台海岸带研究所

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