A high-quality chromosome-level reference genome assembly of Tibetan antelope (Pantholops hodgsonii)
文献类型：期刊论文
| 作者 | Xu, Bo; Chen, Jiarui ; Song, Pengfei; Gu, Haifeng; Jiang, Feng; Li, Bin; Wei, Qing; Zhang, Tongzuo
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| 刊名 | SCIENTIFIC DATA
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| 出版日期 | 2024 |
| 卷号 | 11期号:1 |
| 英文摘要 | Tibetan antelope (Pantholops hodgsonii), a wild ruminant endemic to the Qinghai-Tibetan Plateau (QTP) in China, has evolved a series of genetic and physiological adaptation strategies to thrive in the harsh plateau environments. However, limited research on the genome of this species exists. Here, we established a high-quality chromosome-level reference genome assembly of the Tibetan antelope using PacBio HiFi, DNBSEQ, and Hi-C sequencing data. The assembly, totaling 3.13 GB, consists of 31 chromosomes (29 + X + partial Y), with a Scaffold N50 length of 92.23 Mb. The quality value (QV) and Benchmarking Universal Single-Copy Ortholog (BUSCO) score were 70.14 and 98.20%, respectively, indicating that our genome sequence is of high quality and completeness. Our genome not only contribute to the genetic conservation of Tibetan antelope but also provides a valuable resource for genetic, ecological, and evolutionary research within the sub-family Caprinae. |
| 源URL | [http://210.75.249.4/handle/363003/61907]  |
| 专题 | 西北高原生物研究所_中国科学院西北高原生物研究所 |
| 推荐引用方式 GB/T 7714 | Xu, Bo,Chen, Jiarui,Song, Pengfei,et al. A high-quality chromosome-level reference genome assembly of Tibetan antelope (Pantholops hodgsonii)[J]. SCIENTIFIC DATA,2024,11(1). |
| APA | Xu, Bo.,Chen, Jiarui.,Song, Pengfei.,Gu, Haifeng.,Jiang, Feng.,...&Zhang, Tongzuo.(2024).A high-quality chromosome-level reference genome assembly of Tibetan antelope (Pantholops hodgsonii).SCIENTIFIC DATA,11(1). |
| MLA | Xu, Bo,et al."A high-quality chromosome-level reference genome assembly of Tibetan antelope (Pantholops hodgsonii)".SCIENTIFIC DATA 11.1(2024). |
入库方式： OAI收割
来源：西北高原生物研究所
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