De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians
文献类型：CNKI期刊论文
| 作者 | Teng W(腾文) ; Cong RH(丛日浩); Que HY(阙华勇); Zhang GF(张国范)
|
| 发表日期 | 2018-07-15 |
| 出处 | Journal of Oceanology and Limnology
 |
| 关键词 | molluscs shell coloration differentially expressed genes gene ontology |
| 英文摘要 | Molluscan shell color has received persistent attention for its distinctive diversity and complexity. In the present study, six transcriptome libraries obtained from two developmental stages, pre-pigmentation and post-pigmentation, were used for paired-end sequencing in the bay scallop Argopecten irradians. In total, 289 839 646 paired-end reads were assembled into 70 929 transcripts. Using BLASTX and BLASTN, 30 896 unigenes were successfully annotated against the SWISS-PROT, NR, and KOG database. Gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes classification identified numbers of unigenes involved in biomineralization and pigmentation. Digital gene expression analysis revealed that melanin, trace metal elements and porphyrins are potentially involved in shell coloration of A. irradians. |
| 文献子类 | CNKI期刊论文 |
| 资助机构 | Supported by the China Agriculture Research System(No.CARS-49) ; the Science and Technology Service Network Initiative of Chinese Academy of Sciences |
| 卷 | v.36期:04页:382-390 |
| 语种 | 英文; |
| 分类号 | Q953 |
| ISSN号 | 2096-5508 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/188878]  |
| 专题 | 中国科学院海洋研究所 |
| 作者单位 | 1.InstituteofOceanology,ChineseAcademyofSciences 2.UniversityofChineseAcademyofSciences 3.LaboratoryforMarineBiologyandBiotechnology,QingdaoNationalLaboratoryforMarineScienceandTechnology 4.National&LocalJointEngineeringLaboratoryofEcologicalMariculture |
| 推荐引用方式 GB/T 7714 | Teng W,Cong RH,Que HY,et al. De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians. 2018. |
入库方式： OAI收割
来源：海洋研究所
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