Differential gene expression in the body wall of the sea cucumber(Apostichopus japonicus) under strong lighting and dark conditions
文献类型：CNKI期刊论文
| 作者 | ZHANG Libin; FENG Qiming; SUN Lina; FANG Yan; XU Dongxue ; ZHANG Tao; YANG Hongsheng
|
| 发表日期 | 2018-05-15 |
| 出处 | Acta Oceanologica Sinica
 |
| 关键词 | sea cucumber Apostichopus japonicus gene expression dark light body wall |
| 英文摘要 | Sea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light("light"), normal light("control") and fully dark("dark") environment. In the comparisons of "control" vs. "dark", "control" vs. "light" and "dark" vs."light", 1 161, 113 and 1 705 differentially expressed genes(DEGs) were identified following the criteria of|log_2 ratio|≥1 and FDR≤0.001, respectively. Gene ontology analysis showed that "cellular process" and "binding"enriched the most DEGs in the category of "biological process" and "molecular function", while "cell" and "cell part" enriched the most DEGs in the category of "cellular component". And the DEGs were mapped to 214, 41 and229 pathways in the Kyoto Encyclopedia of Genes and Genomes database, and 51, 2 and 57 pathways were significantly enriched, respectively. Light-specific DEGs identified in this study will be important targets for further investigation to establish the biochemical mechanisms involved in the adaption of this sea cucumber to changes in the level of environmental light. |
| 文献子类 | CNKI期刊论文 |
| 资助机构 | The National Natural Science Foundation of China under contract No.41676136 ; the Strategic Priority Research Program of the Chinese Academy of Sciences under contract No.XDA11020703 ; the Science and Technology Major Project of Shandong Province(Industry Transformation and Upgrading) under contract No.2015ZDZX05002 |
| 卷 | v.37期:05页:58-70 |
| 语种 | 英文; |
| 分类号 | S917.4 |
| ISSN号 | 0253-505X |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/188923]  |
| 专题 | 中国科学院海洋研究所 |
| 作者单位 | 1.CASKeylaboratoryofMarineEcologyandEnvironmentalSciences,InstituteofOceanology,ChineseAcademyofSciences 2.LaboratoryforMarineEcologyandEnvironmentalScience,QingdaoNationalLaboratoryforMarineScienceandTechnology 3.UniversityofChineseAcademyofSciences 4.SchoolofAgriculture,LudongUniversity 5.CollegeofMarineScienceandEngineering,QingdaoAgriculturalUniversity |
| 推荐引用方式 GB/T 7714 | ZHANG Libin,FENG Qiming,SUN Lina,et al. Differential gene expression in the body wall of the sea cucumber(Apostichopus japonicus) under strong lighting and dark conditions. 2018. |
入库方式： OAI收割
来源：海洋研究所
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