Identification and bioinformatics analysis of pseudogenes from whole genome sequence of Phaeodactylum tricornutum
文献类型：CNKI期刊论文
| 作者 | JI ChangMian; HUANG AiYou; LIU WenLing; PAN GuangHua; WANG GuangCe |
| 发表日期 | 2013-03-25 |
| 出处 | Chinese Science Bulletin
 |
| 关键词 | Phaeodactylum tricornutum,pseudogene,pseudogene fragment,bioinformatics |
| 英文摘要 | Pseudogenes share sequence similarities with functional genes,but in general they have lost their protein-coding ability.The identification of pseudogenes is a very important step in genome annotation.Phaeodactylum tricornutum is a marine diatom that is rich in polyunsaturated fatty acids(PUFAs).The genome of P.tricornutum has been completely sequenced.To identify pseudogenes in P.tricornutum,we developed a pipeline to discover and characterize pseudogenes.We identified a total of 1654 'true' processed pseudogenes,714 duplicated pseudogenes and 4729 pseudogene fragments.The results of the bioinformatics analysis indicated that the genome sequence of P.tricornutum contained many pseudogenes and pseudogene fragments. |
| 文献子类 | CNKI期刊论文 |
| 资助机构 | supported by the National Basic Projects for Science and Technology (SQ2012FY4910019-1) ; the Nonprofit Research Project for the State Oceanic Administration (201105008-2) ; the National Natural Science Foundation of China (41176137) |
| 卷 | v.58期:09页:62-70 |
| 语种 | 英文; |
| 分类号 | Q943 |
| ISSN号 | 1001-6538 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/190917]  |
| 专题 | 中国科学院海洋研究所 |
| 作者单位 | 1.TianjinKeyLaboratoryofMarineResourcesandChemistry,CollegeofMarineScienceandEngineering,TianjinUniversityofScienceandTechnology 2.InstituteofOceanology,ChineseAcademyofSciences(IOCAS) 3.GraduateUniversityofChineseAcademyofSciences |
| 推荐引用方式 GB/T 7714 | JI ChangMian,HUANG AiYou,LIU WenLing,et al. Identification and bioinformatics analysis of pseudogenes from whole genome sequence of Phaeodactylum tricornutum. 2013. |
入库方式： OAI收割
来源：海洋研究所
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