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Two high quality chromosome-scale genome assemblies of female and male silver pomfret (Pampus argenteus)

文献类型：期刊论文

作者Hu, Jiabao1,5,6,7; Zhang, Youyi5,6,7; Li, Yaya5,6,7; Li, Yuanbo5,6,7; Zhang, Man5,6,7; Huang, Wanlong4; Xu, Shanliang5,6,7; Wang, Danli5,6,7; Wang, Xubo5,6,7; Liu, Jing2,3
刊名SCIENTIFIC DATA
出版日期2024-10-08
卷号11期号:1页码:11
DOI10.1038/s41597-024-03914-9
通讯作者Wang, Yajun(wangyajun@nbu.edu.cn) ; Yan, Xiaojun(yanxiaojun@nbu.edu.cn)
英文摘要Pampus argenteus is a highly commercial marine fish whose population is declining sharply. Here, we generated a female P. argenteus genome, spanning 536.33 Mb with contig N50 of 1.79 Mb; 24070 genes (99.50% of 24,182) were functionally annotated. To improve quality of it, we assembled a 553.79 Mb genome of male fish with contig N50 of 24.75 Mb through HiFi and ultra-long ONT sequence technologies; 550.82 Mb were anchored onto 24 gap-free chromosomes; 22,892 genes (98.1% of 23,346) were functionally annotated; the QV value was 51.55 with 98.9% of BUSCO and 99.39% coverage of Illumina reads. Finally, we compared this genome with previous published one, revealing 37,301 SVs. 52.82 Mb and 18.05 Mb SDs were characterized in our and published assemblies, respectively, and 48.96 Mb PURs were constructed. Thus, this genome assembly exhibits excellent completeness, continuity and accuracy comparing to the published one, which can be current preferred reference genome. Overall, these works help aquaculture and wild resources recovery of P. argenteus and provide a valuable genetic resource for study.
WOS关键词GENE ; PREDICTION ; IDENTIFICATION ; ELEMENTS
资助项目National Natural Science Foundation of China (National Science Foundation of China)[2022YFD2400103] ; National Natural Science Foundation of China (National Science Foundation of China)[2024C02006] ; National Key R&D Program of China[2021Z003] ; Ningbo 2025 Major Project of Science Technology and Innovation[2022S204] ; Public Welfare Program of Ningbo City (Science and Technology Special Commissioner Project)[31872195] ; Public Welfare Program of Ningbo City (Science and Technology Special Commissioner Project)[42076118] ; Public Welfare Program of Ningbo City (Science and Technology Special Commissioner Project)[42306114] ; Natural Science Foundation of China[2022M721729] ; China Postdoctoral Science Foundation[2021S061] ; Ningbo Public Welfare Science and Technology Project[2021B-029-C] ; Ningbo Yongjiang Talent Introduction Programme
WOS研究方向Science & Technology - Other Topics
语种英语
WOS记录号WOS:001331330300001
出版者NATURE PORTFOLIO
源URL[http://ir.qdio.ac.cn/handle/337002/199324]  
专题海洋研究所_实验海洋生物学重点实验室
海洋研究所_海洋生物分类与系统演化实验室
通讯作者Wang, Yajun; Yan, Xiaojun
作者单位1.Ningbo Univ, Sch Civil & Environm Engn & Geog Sci, Ningbo, Peoples R China
2.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, Key Lab Expt Marine Biol, Qingdao, Peoples R China
3.Chinese Acad Sci, Inst Oceanol, Lab Marine Organism Taxon & Phylogeny, Ctr Ocean Mega Sci,Qingdao Key Lab Marine Biodiver, Qingdao, Peoples R China
4.Novogene Bioinformat Inst, Beijing, Peoples R China
5.Ningbo Univ, Key Lab Marine Biotechnol Zhejiang Prov, Ningbo, Peoples R China
6.Ningbo Univ, Key Lab Appl Marine Biotechnol, Minist Educ, Ningbo, Peoples R China
7.Ningbo Univ, Coll Marine Sci, Ningbo, Peoples R China
推荐引用方式
GB/T 7714		 Hu, Jiabao,Zhang, Youyi,Li, Yaya,et al. Two high quality chromosome-scale genome assemblies of female and male silver pomfret (Pampus argenteus)[J]. SCIENTIFIC DATA,2024,11(1):11.
APA Hu, Jiabao.,Zhang, Youyi.,Li, Yaya.,Li, Yuanbo.,Zhang, Man.,...&Yan, Xiaojun.(2024).Two high quality chromosome-scale genome assemblies of female and male silver pomfret (Pampus argenteus).SCIENTIFIC DATA,11(1),11.
MLA Hu, Jiabao,et al."Two high quality chromosome-scale genome assemblies of female and male silver pomfret (Pampus argenteus)".SCIENTIFIC DATA 11.1(2024):11.

入库方式： OAI收割

来源：海洋研究所

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